JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CARMIL3_chr14_24047009_24074729	0/0	c0017	4119	3	1	0	0	0	2	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0018	4119	3	0	3	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	1/0	c0019	4119	3	0	0	0	0	2	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0020	4119	3	3	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0021	4119	3	3	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0022	4119	2	2	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0023	4119	2	0	1	0	1	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0024	4119	2	0	0	0	1	1	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0025	4119	2	2	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0026	4119	2	0	0	0	0	2	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0027	4119	2	2	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0028	4119	2	2	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0029	4119	2	0	0	2	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0030	4119	2	2	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0031	4119	1	0	1	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0032	4119	1	0	1	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0033	4119	1	0	0	1	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0034	4119	1	0	1	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0035	4119	1	1	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0036	4119	1	0	0	1	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0037	4119	1	0	0	1	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0038	4119	1	1	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0039	4119	1	1	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0040	4119	1	0	0	1	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0041	4119	1	1	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0042	4119	1	0	0	0	1	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0043	4119	1	1	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0044	4119	1	1	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0045	4119	1	1	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0046	4119	1	1	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0047	4119	1	0	0	1	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0048	4119	1	1	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0049	4098	1	0	0	1	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0050	4119	1	1	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0051	4119	1	0	0	1	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0052	4119	1	0	1	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0053	4119	1	0	0	1	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0054	4119	1	1	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0055	4119	1	1	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0056	4119	1	0	0	0	0	1	copy fasta	CARMIL3	chr14	24047009	24074729
CARNMT1_chr9_74975790_75033293	1/1	c0001	1230	361	80	66	156	18	39	copy fasta	CARNMT1	chr9	74975790	75033293
CARNMT1_chr9_74975790_75033293	0/0	c0002	1230	3	0	0	3	0	0	copy fasta	CARNMT1	chr9	74975790	75033293
CARNMT1_chr9_74975790_75033293	0/0	c0003	1230	1	0	0	1	0	0	copy fasta	CARNMT1	chr9	74975790	75033293
CARNMT1_chr9_74975790_75033293	0/0	c0004	1230	1	0	0	0	0	1	copy fasta	CARNMT1	chr9	74975790	75033293
CARNS1_chr11_67410678_67430604	1/0	c0001	2853	166	10	41	70	13	31	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	c0002	2853	38	19	17	2	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	c0003	2853	32	10	1	20	0	1	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	c0004	2853	25	6	3	16	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	c0005	2853	23	3	3	16	1	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	c0006	2853	17	16	1	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604