JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CARNS1_chr11_67410678_67430604	0/0	c0007	2853	10	10	0	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	c0008	2853	8	0	1	7	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	c0009	2853	7	7	0	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	c0010	2853	3	0	0	3	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	c0011	2853	1	0	1	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	c0012	2853	1	1	0	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	c0013	2853	1	1	0	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	c0014	2853	1	1	0	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	c0015	2853	1	1	0	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	c0016	2853	1	1	0	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	c0017	2853	1	0	0	1	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	c0018	2853	1	0	0	1	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	c0019	2853	1	1	0	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/1	c0020	2853	1	0	0	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	c0021	2853	1	0	0	0	0	1	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	c0022	2853	1	0	1	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	c0023	2853	1	0	0	1	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	c0024	2853	1	1	0	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	c0025	2853	1	0	1	0	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	c0026	2853	1	0	0	1	0	0	copy fasta	CARNS1	chr11	67410678	67430604
CARNS1_chr11_67410678_67430604	0/0	c0027	2853	1	0	0	0	0	1	copy fasta	CARNS1	chr11	67410678	67430604
CARS1_chr11_2995929_3062423	0/0	c0001	2496	190	69	36	47	12	26	copy fasta	CARS1	chr11	2995929	3062423
CARS1_chr11_2995929_3062423	0/1	c0002	2496	94	1	18	55	6	13	copy fasta	CARS1	chr11	2995929	3062423
CARS1_chr11_2995929_3062423	0/0	c0003	2496	13	13	0	0	0	0	copy fasta	CARS1	chr11	2995929	3062423
CARS1_chr11_2995929_3062423	0/0	c0004	2496	6	5	1	0	0	0	copy fasta	CARS1	chr11	2995929	3062423
CARS1_chr11_2995929_3062423	0/0	c0005	2496	3	2	1	0	0	0	copy fasta	CARS1	chr11	2995929	3062423
CARS1_chr11_2995929_3062423	0/0	c0006	2496	2	0	0	2	0	0	copy fasta	CARS1	chr11	2995929	3062423
CARS1_chr11_2995929_3062423	0/0	c0007	2496	1	0	1	0	0	0	copy fasta	CARS1	chr11	2995929	3062423
CARS1_chr11_2995929_3062423	0/0	c0008	2496	1	0	0	1	0	0	copy fasta	CARS1	chr11	2995929	3062423
CARS1_chr11_2995929_3062423	0/0	c0009	2496	1	1	0	0	0	0	copy fasta	CARS1	chr11	2995929	3062423
CARS1_chr11_2995929_3062423	0/0	c0010	2496	1	1	0	0	0	0	copy fasta	CARS1	chr11	2995929	3062423
CARS1_chr11_2995929_3062423	0/0	c0011	2496	1	0	0	1	0	0	copy fasta	CARS1	chr11	2995929	3062423
CARS1_chr11_2995929_3062423	0/0	c0012	2496	1	0	1	0	0	0	copy fasta	CARS1	chr11	2995929	3062423
CARS1_chr11_2995929_3062423	0/0	c0013	2496	1	1	0	0	0	0	copy fasta	CARS1	chr11	2995929	3062423
CARS1_chr11_2995929_3062423	0/0	c0014	2496	1	0	0	1	0	0	copy fasta	CARS1	chr11	2995929	3062423
CARS1_chr11_2995929_3062423	0/0	c0015	2496	1	1	0	0	0	0	copy fasta	CARS1	chr11	2995929	3062423
CARS1_chr11_2995929_3062423	0/0	c0016	2496	1	0	0	0	0	1	copy fasta	CARS1	chr11	2995929	3062423
CARS1_chr11_2995929_3062423	0/0	c0017	2496	1	0	0	1	0	0	copy fasta	CARS1	chr11	2995929	3062423
CARS1_chr11_2995929_3062423	0/0	c0018	2496	1	1	0	0	0	0	copy fasta	CARS1	chr11	2995929	3062423
CARS1_chr11_2995929_3062423	0/0	c0019	2496	1	1	0	0	0	0	copy fasta	CARS1	chr11	2995929	3062423
CARS2_chr13_110636417_110711116	0/0	c0001	1695	121	21	18	68	4	10	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/1	c0002	1695	72	18	18	27	1	7	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	c0003	1695	47	23	7	8	0	9	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	c0004	1695	38	4	9	19	2	4	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	c0005	1695	27	2	6	12	5	2	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	c0006	1695	21	0	8	11	2	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	1/0	c0007	1695	8	5	1	0	0	1	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	c0008	1695	5	2	2	0	0	1	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	c0009	1695	3	3	0	0	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	c0010	1695	3	0	0	0	0	3	copy fasta	CARS2	chr13	110636417	110711116