JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CARS2_chr13_110636417_110711116	0/0	c0011	1695	3	3	0	0	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	c0012	1695	3	3	0	0	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	c0013	1695	2	0	0	2	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	c0014	1695	2	2	0	0	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	c0015	1695	2	2	0	0	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	c0016	1695	1	0	0	1	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	c0017	1695	1	1	0	0	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	c0018	1695	1	0	1	0	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	c0019	1695	1	0	1	0	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	c0020	1695	1	1	0	0	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	c0021	1695	1	0	0	1	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	c0022	1695	1	0	0	1	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	c0023	1695	1	0	0	1	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	c0024	1695	1	0	0	1	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	c0025	1695	1	0	0	1	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	c0026	1695	1	0	0	1	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	c0027	1695	1	0	1	0	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	c0028	1695	1	0	1	0	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	c0029	1695	1	0	1	0	0	0	copy fasta	CARS2	chr13	110636417	110711116
CARS2_chr13_110636417_110711116	0/0	c0030	1695	1	0	0	0	0	1	copy fasta	CARS2	chr13	110636417	110711116
CARTPT_chr5_71714275_71726045	1/0	c0001	351	472	96	84	226	16	49	copy fasta	CARTPT	chr5	71714275	71726045
CARTPT_chr5_71714275_71726045	0/1	c0002	351	1	0	0	0	0	0	copy fasta	CARTPT	chr5	71714275	71726045
CARTPT_chr5_71714275_71726045	0/0	c0003	351	1	0	0	0	0	1	copy fasta	CARTPT	chr5	71714275	71726045
CASC3_chr17_40135537_40177171	1/1	c0001	2112	259	82	54	82	11	28	copy fasta	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	c0002	2112	1	0	0	1	0	0	copy fasta	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	c0003	2112	1	0	0	1	0	0	copy fasta	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	c0004	2112	1	0	0	0	1	0	copy fasta	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	c0005	2112	1	1	0	0	0	0	copy fasta	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	c0006	2112	1	0	0	1	0	0	copy fasta	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	c0007	2112	1	0	0	1	0	0	copy fasta	CASC3	chr17	40135537	40177171
CASC3_chr17_40135537_40177171	0/0	c0008	2112	1	1	0	0	0	0	copy fasta	CASC3	chr17	40135537	40177171
CASD1_chr7_94504809_94562019	1/0	c0001	2394	253	61	51	99	6	35	copy fasta	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	c0002	2394	62	0	9	46	3	4	copy fasta	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	c0003	2394	53	7	7	38	1	0	copy fasta	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	c0004	2394	13	0	0	13	0	0	copy fasta	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	c0005	2394	6	6	0	0	0	0	copy fasta	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	c0006	2394	4	3	1	0	0	0	copy fasta	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	c0007	2394	2	0	0	2	0	0	copy fasta	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/1	c0008	2394	1	0	0	0	0	0	copy fasta	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	c0009	2394	1	0	0	1	0	0	copy fasta	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	c0010	2394	1	1	0	0	0	0	copy fasta	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	c0011	2394	1	0	0	0	0	1	copy fasta	CASD1	chr7	94504809	94562019
CASD1_chr7_94504809_94562019	0/0	c0012	2394	1	0	0	1	0	0	copy fasta	CASD1	chr7	94504809	94562019
CASKIN1_chr16_2172180_2201605	1/1	c0001	4296	264	49	56	109	11	37	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0002	4299	15	12	2	1	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0003	4296	4	4	0	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0004	4296	4	0	0	4	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0005	4296	4	0	0	4	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0006	4296	4	0	0	1	1	2	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0007	4296	3	0	0	3	0	0	copy fasta	CASKIN1	chr16	2172180	2201605