JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CASKIN1_chr16_2172180_2201605	0/0	c0008	4299	3	3	0	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0009	4302	3	0	0	3	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0010	4296	3	3	0	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0011	4296	3	3	0	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0012	4296	3	2	1	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0013	4296	2	2	0	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0014	4296	2	0	0	2	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0015	4296	2	2	0	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0016	4296	2	0	1	0	1	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0017	4284	2	0	0	2	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0018	4296	2	0	0	0	2	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0019	4296	1	0	1	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0020	4296	1	1	0	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0021	4296	1	0	1	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0022	4286	1	0	0	1	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0023	4302	1	1	0	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0024	4296	1	0	0	0	0	1	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0025	4296	1	0	0	1	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0026	4296	1	0	0	0	0	1	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0027	4296	1	0	0	1	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0028	4296	1	0	0	0	0	1	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0029	4296	1	1	0	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0030	4296	1	1	0	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0031	4296	1	0	0	0	1	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0032	4302	1	1	0	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0033	4299	1	1	0	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0034	4299	1	0	0	0	0	1	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0035	4296	1	0	0	0	0	1	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0036	4296	1	1	0	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0037	4296	1	0	0	0	0	1	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0038	4296	1	0	0	1	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0039	4296	1	0	1	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0040	4296	1	0	0	0	0	1	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0041	4296	1	1	0	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0042	4296	1	0	0	1	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN1_chr16_2172180_2201605	0/0	c0043	4296	1	0	1	0	0	0	copy fasta	CASKIN1	chr16	2172180	2201605
CASKIN2_chr17_75495261_75520537	0/1	c0001	3609	131	10	35	49	13	23	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0002	3609	119	61	15	30	4	9	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	1/0	c0003	3609	68	2	12	50	1	2	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0004	3609	35	0	12	20	0	3	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0005	3609	6	6	0	0	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0006	3609	4	3	1	0	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0007	3609	4	0	0	0	0	4	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0008	3609	3	0	0	3	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0009	3609	3	3	0	0	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0010	3609	3	1	0	1	0	1	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0011	3609	2	0	0	2	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0012	3609	2	1	0	1	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0013	3609	2	0	2	0	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0014	3609	2	0	2	0	0	0	copy fasta	CASKIN2	chr17	75495261	75520537