JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CASKIN2_chr17_75495261_75520537	0/0	c0015	3609	2	0	2	0	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0016	3609	1	0	0	1	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0017	3609	1	0	0	1	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0018	3609	1	0	0	1	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0019	3609	1	0	0	1	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0020	3609	1	0	0	1	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0021	3609	1	0	1	0	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0022	3609	1	0	0	1	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0023	3609	1	0	0	1	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0024	3609	1	0	0	0	0	1	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0025	3609	1	0	0	0	0	1	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0026	3609	1	0	1	0	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0027	3609	1	0	0	1	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0028	3609	1	0	0	1	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0029	3609	1	1	0	0	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0030	3609	1	0	0	0	0	1	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0031	3609	1	1	0	0	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0032	3609	1	0	0	0	0	1	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0033	3639	1	0	0	0	0	1	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0034	3609	1	1	0	0	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0035	3609	1	0	0	1	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0036	3609	1	1	0	0	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0037	3609	1	0	0	1	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0038	3609	1	0	0	0	0	1	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0039	3609	1	1	0	0	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0040	3609	1	1	0	0	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0041	3609	1	1	0	0	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0042	3609	1	0	1	0	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASKIN2_chr17_75495261_75520537	0/0	c0043	3609	1	0	0	1	0	0	copy fasta	CASKIN2	chr17	75495261	75520537
CASK_chrX_41509934_41928554	1/1	c0001	2781	157	30	29	68	9	19	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	c0002	2781	2	0	0	2	0	0	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	c0003	2781	1	0	0	1	0	0	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	c0004	2780	1	0	0	1	0	0	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	c0005	2781	1	0	0	0	0	1	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	c0006	2781	1	1	0	0	0	0	copy fasta	CASK	chrX	41509934	41928554
CASK_chrX_41509934_41928554	0/0	c0007	2781	1	1	0	0	0	0	copy fasta	CASK	chrX	41509934	41928554
CASP10_chr2_201178141_201226665	1/0	c0001	1569	197	45	39	81	2	29	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/1	c0002	1569	90	24	24	27	5	9	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	c0003	1569	14	11	1	1	1	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	c0004	1569	6	0	3	0	2	1	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	c0005	1569	4	4	0	0	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	c0006	1569	2	2	0	0	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	c0007	1569	1	0	0	0	1	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	c0008	1569	1	1	0	0	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	c0009	1569	1	0	0	0	0	1	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	c0010	1569	1	0	0	1	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	c0011	1569	1	1	0	0	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	c0012	1569	1	0	0	0	1	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	c0013	1614	1	1	0	0	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP10_chr2_201178141_201226665	0/0	c0014	1569	1	1	0	0	0	0	copy fasta	CASP10	chr2	201178141	201226665