JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CASP10_chr2_201178141_201226665	0/0	c0015	1569	1	0	1	0	0	0	copy fasta	CASP10	chr2	201178141	201226665
CASP14_chr19_15044480_15063293	1/1	c0001	729	409	86	71	186	18	46	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	c0002	729	5	5	0	0	0	0	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	c0003	729	4	0	4	0	0	0	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	c0004	729	2	2	0	0	0	0	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	c0005	729	2	2	0	0	0	0	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	c0006	729	2	0	0	2	0	0	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	c0007	729	1	0	0	1	0	0	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	c0008	729	1	0	0	1	0	0	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	c0009	729	1	0	1	0	0	0	copy fasta	CASP14	chr19	15044480	15063293
CASP14_chr19_15044480_15063293	0/0	c0010	729	1	1	0	0	0	0	copy fasta	CASP14	chr19	15044480	15063293
CASP1_chr11_105020508_105040144	1/1	c0001	1215	322	59	57	158	12	34	copy fasta	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	c0002	1215	27	8	15	0	0	4	copy fasta	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	c0003	1215	16	8	1	5	0	2	copy fasta	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	c0004	1215	15	12	3	0	0	0	copy fasta	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	c0005	1215	11	0	0	11	0	0	copy fasta	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	c0006	1215	4	4	0	0	0	0	copy fasta	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	c0007	1215	2	2	0	0	0	0	copy fasta	CASP1	chr11	105020508	105040144
CASP1_chr11_105020508_105040144	0/0	c0008	1215	1	1	0	0	0	0	copy fasta	CASP1	chr11	105020508	105040144
CASP2_chr7_143283351_143312696	1/1	c0001	1359	229	78	47	68	12	22	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	c0002	1359	8	2	4	0	1	1	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	c0003	1359	3	3	0	0	0	0	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	c0004	1359	2	0	2	0	0	0	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	c0005	1359	2	0	1	0	0	1	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	c0006	1359	1	1	0	0	0	0	copy fasta	CASP2	chr7	143283351	143312696
CASP2_chr7_143283351_143312696	0/0	c0007	1359	1	0	0	0	1	0	copy fasta	CASP2	chr7	143283351	143312696
CASP3_chr4_184622696_184654447	1/1	c0001	834	362	93	72	136	18	41	copy fasta	CASP3	chr4	184622696	184654447
CASP3_chr4_184622696_184654447	0/0	c0002	834	3	3	0	0	0	0	copy fasta	CASP3	chr4	184622696	184654447
CASP3_chr4_184622696_184654447	0/0	c0003	834	1	0	0	0	0	1	copy fasta	CASP3	chr4	184622696	184654447
CASP4_chr11_104937866_104973574	0/1	c0001	1134	305	60	62	135	11	36	copy fasta	CASP4	chr11	104937866	104973574
CASP4_chr11_104937866_104973574	1/0	c0002	1134	20	18	1	0	0	0	copy fasta	CASP4	chr11	104937866	104973574
CASP4_chr11_104937866_104973574	0/0	c0003	1134	13	1	3	2	1	6	copy fasta	CASP4	chr11	104937866	104973574
CASP4_chr11_104937866_104973574	0/0	c0004	1134	9	6	3	0	0	0	copy fasta	CASP4	chr11	104937866	104973574
CASP4_chr11_104937866_104973574	0/0	c0005	1134	5	4	1	0	0	0	copy fasta	CASP4	chr11	104937866	104973574
CASP4_chr11_104937866_104973574	0/0	c0006	1134	2	0	2	0	0	0	copy fasta	CASP4	chr11	104937866	104973574
CASP4_chr11_104937866_104973574	0/0	c0007	1134	1	0	0	1	0	0	copy fasta	CASP4	chr11	104937866	104973574
CASP4_chr11_104937866_104973574	0/0	c0008	1134	1	1	0	0	0	0	copy fasta	CASP4	chr11	104937866	104973574
CASP4_chr11_104937866_104973574	0/0	c0009	1134	1	1	0	0	0	0	copy fasta	CASP4	chr11	104937866	104973574
CASP4_chr11_104937866_104973574	0/0	c0010	1134	1	1	0	0	0	0	copy fasta	CASP4	chr11	104937866	104973574
CASP5_chr11_104989243_105028168	0/0	c0001	1305	148	17	17	97	2	15	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	1/0	c0002	1305	71	9	25	18	3	15	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/1	c0003	1305	66	10	25	22	1	7	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	c0004	1305	42	6	8	19	4	5	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	c0005	1305	10	10	0	0	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	c0006	1305	8	5	2	0	0	1	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	c0007	1305	6	5	0	0	0	1	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	c0008	1305	6	6	0	0	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	c0009	1305	6	4	2	0	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	c0010	1305	6	6	0	0	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	c0011	1305	3	3	0	0	0	0	copy fasta	CASP5	chr11	104989243	105028168