JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CASP5_chr11_104989243_105028168	0/0	c0012	1305	3	3	0	0	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	c0013	1305	2	1	0	0	0	1	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	c0014	1305	2	2	0	0	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	c0015	1305	2	2	0	0	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	c0016	1305	2	0	2	0	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	c0017	1305	2	1	1	0	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	c0018	1305	1	0	1	0	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	c0019	1305	1	1	0	0	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	c0020	1305	1	1	0	0	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	c0021	1273	1	0	0	0	0	1	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	c0022	1305	1	1	0	0	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	c0023	1305	1	1	0	0	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	c0024	1305	1	0	0	1	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	c0025	1305	1	1	0	0	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	c0026	1305	1	1	0	0	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	c0027	1305	1	0	0	1	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP5_chr11_104989243_105028168	0/0	c0028	1305	1	0	1	0	0	0	copy fasta	CASP5	chr11	104989243	105028168
CASP6_chr4_109683628_109708445	1/1	c0001	882	390	69	74	187	16	42	copy fasta	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	c0002	882	14	13	1	0	0	0	copy fasta	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	c0003	882	7	7	0	0	0	0	copy fasta	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	c0004	882	2	1	1	0	0	0	copy fasta	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	c0005	882	2	0	0	2	0	0	copy fasta	CASP6	chr4	109683628	109708445
CASP6_chr4_109683628_109708445	0/0	c0006	882	1	0	0	1	0	0	copy fasta	CASP6	chr4	109683628	109708445
CASP7_chr10_113674912_113735905	1/1	c0001	912	243	64	41	99	9	28	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/0	c0002	912	110	12	24	62	3	9	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/0	c0003	912	39	10	11	14	2	2	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/0	c0004	912	3	1	0	1	0	1	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/0	c0005	912	2	2	0	0	0	0	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/0	c0006	912	2	2	0	0	0	0	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/0	c0007	912	1	0	1	0	0	0	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/0	c0008	912	1	0	0	0	0	1	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/0	c0009	930	1	1	0	0	0	0	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/0	c0010	912	1	0	1	0	0	0	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/0	c0011	912	1	1	0	0	0	0	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/0	c0012	912	1	1	0	0	0	0	copy fasta	CASP7	chr10	113674912	113735905
CASP7_chr10_113674912_113735905	0/0	c0013	912	1	0	0	0	0	1	copy fasta	CASP7	chr10	113674912	113735905
CASP8_chr2_201255536_201292709	1/1	c0001	1440	277	63	56	121	5	30	copy fasta	CASP8	chr2	201255536	201292709
CASP8_chr2_201255536_201292709	0/0	c0002	1440	83	20	3	44	0	16	copy fasta	CASP8	chr2	201255536	201292709
CASP8_chr2_201255536_201292709	0/0	c0003	1440	13	8	3	1	1	0	copy fasta	CASP8	chr2	201255536	201292709
CASP8_chr2_201255536_201292709	0/0	c0004	1440	8	0	0	8	0	0	copy fasta	CASP8	chr2	201255536	201292709
CASP8_chr2_201255536_201292709	0/0	c0005	1440	2	0	2	0	0	0	copy fasta	CASP8	chr2	201255536	201292709
CASP8_chr2_201255536_201292709	0/0	c0006	1440	1	1	0	0	0	0	copy fasta	CASP8	chr2	201255536	201292709
CASP8_chr2_201255536_201292709	0/0	c0007	1440	1	1	0	0	0	0	copy fasta	CASP8	chr2	201255536	201292709
CASP8_chr2_201255536_201292709	0/0	c0008	1440	1	1	0	0	0	0	copy fasta	CASP8	chr2	201255536	201292709
CASP9_chr1_15486401_15529215	1/1	c0001	1251	132	19	28	55	10	18	copy fasta	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	c0002	1251	126	27	22	63	4	10	copy fasta	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	c0003	1251	84	38	17	17	2	10	copy fasta	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	c0004	1251	2	0	2	0	0	0	copy fasta	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	c0005	1251	1	0	1	0	0	0	copy fasta	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	c0006	1251	1	1	0	0	0	0	copy fasta	CASP9	chr1	15486401	15529215