Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACOT11_chr1_54543228_54615329	0/0	c0003	1785	36	4	3	27	0	2	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	c0004	1785	32	0	2	30	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	c0005	1785	15	6	3	6	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	c0006	1785	14	1	0	10	1	2	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	c0007	1785	10	0	0	10	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	c0008	1785	7	7	0	0	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	c0009	1785	7	7	0	0	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	c0010	1785	5	0	3	0	1	1	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	c0011	1785	5	5	0	0	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	c0012	1785	4	4	0	0	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	c0013	1785	3	0	0	3	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	c0014	1785	3	0	3	0	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	c0015	1785	2	2	0	0	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	c0016	1785	2	0	0	2	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	c0017	1785	2	2	0	0	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	c0018	1785	1	0	0	0	1	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	c0019	1785	1	1	0	0	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	c0020	1785	1	0	0	0	0	1	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	c0021	1785	1	0	0	1	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	c0022	1402	1	1	0	0	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	c0023	1785	1	1	0	0	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	c0024	1785	1	0	0	1	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	c0025	1785	1	0	0	1	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	c0026	1785	1	1	0	0	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	c0027	1785	1	0	0	1	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	c0028	1785	1	1	0	0	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	c0029	1785	1	1	0	0	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	c0030	1785	1	1	0	0	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	c0031	1785	1	1	0	0	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	c0032	1785	1	1	0	0	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT11_chr1_54543228_54615329	0/0	c0033	1785	1	0	1	0	0	0	copy fasta	ACOT11	chr1	54543228	54615329
ACOT12_chr5_81324996_81399134	1/1	c0001	1668	238	70	51	78	11	26	copy fasta	ACOT12	chr5	81324996	81399134
ACOT12_chr5_81324996_81399134	0/0	c0002	1668	29	15	10	0	0	4	copy fasta	ACOT12	chr5	81324996	81399134
ACOT12_chr5_81324996_81399134	0/0	c0003	1668	5	2	1	0	0	2	copy fasta	ACOT12	chr5	81324996	81399134
ACOT12_chr5_81324996_81399134	0/0	c0004	1668	1	0	1	0	0	0	copy fasta	ACOT12	chr5	81324996	81399134
ACOT12_chr5_81324996_81399134	0/0	c0005	1668	1	1	0	0	0	0	copy fasta	ACOT12	chr5	81324996	81399134
ACOT12_chr5_81324996_81399134	0/0	c0006	1668	1	1	0	0	0	0	copy fasta	ACOT12	chr5	81324996	81399134
ACOT12_chr5_81324996_81399134	0/0	c0007	1668	1	1	0	0	0	0	copy fasta	ACOT12	chr5	81324996	81399134
ACOT12_chr5_81324996_81399134	0/0	c0008	1668	1	0	1	0	0	0	copy fasta	ACOT12	chr5	81324996	81399134
ACOT12_chr5_81324996_81399134	0/0	c0009	1668	1	0	0	0	1	0	copy fasta	ACOT12	chr5	81324996	81399134
ACOT13_chr6_24662077_24710046	1/0	c0001	423	357	76	67	166	11	36	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/1	c0002	423	41	13	10	6	7	4	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	c0003	423	3	3	0	0	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT13_chr6_24662077_24710046	0/0	c0004	423	1	0	1	0	0	0	copy fasta	ACOT13	chr6	24662077	24710046
ACOT1_chr14_73532143_73548796	0/0	c0001	1266	74	23	23	6	5	17	copy fasta	ACOT1	chr14	73532143	73548796
ACOT1_chr14_73532143_73548796	0/0	c0002	1266	10	8	2	0	0	0	copy fasta	ACOT1	chr14	73532143	73548796
ACOT1_chr14_73532143_73548796	0/0	c0003	1266	9	9	0	0	0	0	copy fasta	ACOT1	chr14	73532143	73548796
ACOT1_chr14_73532143_73548796	0/0	c0004	1266	5	4	1	0	0	0	copy fasta	ACOT1	chr14	73532143	73548796
ACOT1_chr14_73532143_73548796	0/0	c0005	1266	5	4	1	0	0	0	copy fasta	ACOT1	chr14	73532143	73548796
ACOT1_chr14_73532143_73548796	0/0	c0006	1266	2	2	0	0	0	0	copy fasta	ACOT1	chr14	73532143	73548796