JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CASP9_chr1_15486401_15529215	0/0	c0007	1251	1	1	0	0	0	0	copy fasta	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	c0008	1251	1	0	0	1	0	0	copy fasta	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	c0009	1251	1	1	0	0	0	0	copy fasta	CASP9	chr1	15486401	15529215
CASP9_chr1_15486401_15529215	0/0	c0010	1251	1	1	0	0	0	0	copy fasta	CASP9	chr1	15486401	15529215
CASQ1_chr1_160185575_160206886	1/1	c0001	1191	420	85	81	193	14	45	copy fasta	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	c0002	1191	4	4	0	0	0	0	copy fasta	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	c0003	1191	4	4	0	0	0	0	copy fasta	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	c0004	1191	3	2	1	0	0	0	copy fasta	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	c0005	1191	2	1	1	0	0	0	copy fasta	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	c0006	1191	1	0	0	1	0	0	copy fasta	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	c0007	1191	1	1	0	0	0	0	copy fasta	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	c0008	1191	1	0	1	0	0	0	copy fasta	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	c0009	1191	1	0	0	0	0	1	copy fasta	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	c0010	1191	1	1	0	0	0	0	copy fasta	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	c0011	1191	1	0	0	1	0	0	copy fasta	CASQ1	chr1	160185575	160206886
CASQ1_chr1_160185575_160206886	0/0	c0012	1191	1	0	0	1	0	0	copy fasta	CASQ1	chr1	160185575	160206886
CASQ2_chr1_115695021_115773714	0/0	c0001	1200	107	23	23	41	4	16	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	1/0	c0002	1200	97	21	20	44	2	9	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/0	c0003	1200	64	19	5	33	2	5	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/1	c0004	1200	54	12	5	29	2	5	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/0	c0005	1200	20	1	4	15	0	0	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/0	c0006	1200	6	0	5	0	0	1	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/0	c0007	1200	5	5	0	0	0	0	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/0	c0008	1200	5	5	0	0	0	0	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/0	c0009	1200	2	2	0	0	0	0	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/0	c0010	1200	1	0	0	1	0	0	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/0	c0011	1200	1	1	0	0	0	0	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/0	c0012	1200	1	0	0	1	0	0	copy fasta	CASQ2	chr1	115695021	115773714
CASQ2_chr1_115695021_115773714	0/0	c0013	1200	1	1	0	0	0	0	copy fasta	CASQ2	chr1	115695021	115773714
CASR_chr3_122178668_122296629	0/1	c0001	3237	195	78	43	41	13	19	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	c0002	3237	61	1	3	46	1	10	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	c0003	3237	17	0	6	4	2	5	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	c0004	3237	10	6	0	2	0	2	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	1/0	c0005	3237	9	8	0	0	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	c0006	3237	5	0	5	0	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	c0007	3237	5	0	0	5	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	c0008	3237	3	0	0	3	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	c0009	3237	2	0	0	2	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	c0010	3237	1	0	0	1	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	c0011	3237	1	0	0	1	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	c0012	3237	1	0	0	1	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	c0013	3237	1	0	0	1	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	c0014	3237	1	0	0	1	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	c0015	3237	1	1	0	0	0	0	copy fasta	CASR	chr3	122178668	122296629
CASR_chr3_122178668_122296629	0/0	c0016	3237	1	0	1	0	0	0	copy fasta	CASR	chr3	122178668	122296629
CASS4_chr20_56407260_56465382	0/0	c0001	2361	123	7	28	79	3	6	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	1/1	c0002	2361	104	37	28	15	8	14	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	c0003	2361	44	2	4	37	0	1	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	c0004	2361	37	24	0	13	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	c0005	2361	24	2	13	1	2	6	copy fasta	CASS4	chr20	56407260	56465382