JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CASS4_chr20_56407260_56465382	0/0	c0006	2361	7	6	1	0	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	c0007	2361	6	6	0	0	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	c0008	2361	4	4	0	0	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	c0009	2361	3	1	1	1	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	c0010	2361	3	0	0	3	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	c0011	2361	3	0	0	3	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	c0012	2361	2	0	0	1	0	1	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	c0013	2361	2	2	0	0	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	c0014	2361	1	0	0	0	0	1	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	c0015	2361	1	1	0	0	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	c0016	2361	1	0	0	0	1	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	c0017	2361	1	1	0	0	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	c0018	2361	1	0	0	0	0	1	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	c0019	2361	1	0	0	0	0	1	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	c0020	2361	1	0	0	0	0	1	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	c0021	2361	1	0	1	0	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	c0022	2361	1	1	0	0	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	c0023	2361	1	1	0	0	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	c0024	2361	1	1	0	0	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	c0025	2361	1	0	0	1	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	c0026	2361	1	1	0	0	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASS4_chr20_56407260_56465382	0/0	c0027	2361	1	1	0	0	0	0	copy fasta	CASS4	chr20	56407260	56465382
CASTOR1_chr22_30280117_30294505	1/1	c0001	990	423	92	79	188	18	44	copy fasta	CASTOR1	chr22	30280117	30294505
CASTOR1_chr22_30280117_30294505	0/0	c0002	990	1	0	1	0	0	0	copy fasta	CASTOR1	chr22	30280117	30294505
CASTOR2_chr7_74959705_75036528	1/1	c0001	990	216	76	48	50	8	32	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	c0002	990	6	5	1	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	c0003	990	3	3	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	c0004	990	2	1	1	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CASTOR2_chr7_74959705_75036528	0/0	c0005	990	1	1	0	0	0	0	copy fasta	CASTOR2	chr7	74959705	75036528
CAST_chr5_96657376_96779683	1/0	c0001	2376	166	30	24	83	11	17	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/1	c0002	2376	54	2	9	33	3	6	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	c0003	2376	48	5	14	19	2	8	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	c0004	2376	32	15	6	7	0	4	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	c0005	2376	7	7	0	0	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	c0006	2376	7	2	3	0	0	2	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	c0007	2376	6	5	1	0	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	c0008	2376	4	3	1	0	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	c0009	2376	4	0	2	2	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	c0010	2376	4	3	1	0	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	c0011	2376	3	2	1	0	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	c0012	2376	3	2	0	0	0	1	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	c0013	2376	2	2	0	0	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	c0014	2376	2	2	0	0	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	c0015	2376	2	0	0	0	0	2	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	c0016	2376	1	1	0	0	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	c0017	2376	1	1	0	0	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	c0018	2376	1	0	1	0	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	c0019	2376	1	0	0	1	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	c0020	2376	1	0	0	0	0	1	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	c0021	2376	1	1	0	0	0	0	copy fasta	CAST	chr5	96657376	96779683