JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CAST_chr5_96657376_96779683	0/0	c0022	2376	1	1	0	0	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	c0023	2376	1	0	0	1	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	c0024	2376	1	0	0	0	0	1	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	c0025	2376	1	0	0	1	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	c0026	2376	1	1	0	0	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	c0027	2376	1	0	0	1	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	c0028	2376	1	0	1	0	0	0	copy fasta	CAST	chr5	96657376	96779683
CAST_chr5_96657376_96779683	0/0	c0029	2376	1	1	0	0	0	0	copy fasta	CAST	chr5	96657376	96779683
CASZ1_chr1_10631604_10801646	1/0	c0001	5280	82	14	15	35	3	14	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0002	5280	46	13	16	9	1	7	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0003	5280	34	12	2	14	0	6	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0004	5280	6	6	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0005	5280	6	6	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0006	5280	5	5	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0007	5274	5	4	1	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0008	5280	5	1	3	1	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0009	5280	3	2	0	0	0	1	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0010	5274	3	0	0	3	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0011	5280	3	2	1	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0012	5280	3	3	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0013	5280	2	0	0	2	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0014	5280	2	2	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/1	c0015	5280	2	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0016	5280	2	0	0	1	0	1	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0017	5280	2	2	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0018	5280	1	0	1	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0019	5280	1	0	0	0	1	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0020	5280	1	0	1	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0021	5280	1	0	0	1	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0022	5280	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0023	5280	1	0	0	1	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0024	5274	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0025	5280	1	0	0	0	0	1	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0026	5280	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0027	5280	1	0	0	1	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0028	5274	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0029	5280	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0030	5280	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0031	5280	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0032	5265	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0033	5280	1	0	0	0	0	1	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0034	5280	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0035	5274	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0036	5274	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0037	5280	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0038	5274	1	0	0	0	1	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0039	5280	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0040	5280	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0041	5274	1	0	0	0	0	1	copy fasta	CASZ1	chr1	10631604	10801646
CASZ1_chr1_10631604_10801646	0/0	c0042	5280	1	1	0	0	0	0	copy fasta	CASZ1	chr1	10631604	10801646