JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CATIP_chr2_218351857_218373094	0/0	c0001	1164	296	87	52	115	9	33	copy fasta	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/1	c0002	1164	51	3	20	18	5	4	copy fasta	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	c0003	1164	4	0	0	4	0	0	copy fasta	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	1/0	c0004	1164	4	3	0	0	0	0	copy fasta	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	c0005	1164	3	0	0	3	0	0	copy fasta	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	c0006	1164	2	2	0	0	0	0	copy fasta	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	c0007	1164	1	0	0	1	0	0	copy fasta	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	c0008	1164	1	0	0	0	0	1	copy fasta	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	c0009	1164	1	0	0	1	0	0	copy fasta	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	c0010	1164	1	1	0	0	0	0	copy fasta	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	c0011	1164	1	0	0	1	0	0	copy fasta	CATIP	chr2	218351857	218373094
CATIP_chr2_218351857_218373094	0/0	c0012	1164	1	0	0	1	0	0	copy fasta	CATIP	chr2	218351857	218373094
CATSPER1_chr11_66011752_66031479	0/1	c0001	2343	140	17	31	55	10	26	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	c0002	2343	73	1	22	41	4	5	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	c0003	2343	54	13	12	21	2	6	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	1/0	c0004	2343	32	14	1	16	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	c0005	2343	25	20	3	2	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	c0006	2343	21	0	1	20	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	c0007	2343	13	13	0	0	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	c0008	2343	8	0	0	8	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	c0009	2343	6	0	0	6	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	c0010	2343	6	0	0	6	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	c0011	2343	5	4	1	0	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	c0012	2343	3	0	0	3	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	c0013	2343	3	3	0	0	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	c0014	2343	2	2	0	0	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	c0015	2343	2	0	0	2	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	c0016	2343	1	0	0	1	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	c0017	2343	1	1	0	0	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	c0018	2343	1	0	0	1	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	c0019	2343	1	1	0	0	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	c0020	2343	1	1	0	0	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	c0021	2343	1	1	0	0	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	c0022	2343	1	0	1	0	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	c0023	2343	1	0	0	0	0	1	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	c0024	2343	1	1	0	0	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	c0025	2326	1	0	0	1	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	c0026	2343	1	1	0	0	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	c0027	2343	1	1	0	0	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	c0028	2343	1	0	1	0	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	c0029	2343	1	0	1	0	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER1_chr11_66011752_66031479	0/0	c0030	2343	1	0	0	1	0	0	copy fasta	CATSPER1	chr11	66011752	66031479
CATSPER2_chr15_43623503_43653844	1/0	c0001	1593	281	53	51	130	14	32	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	c0002	1593	88	19	12	49	1	7	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	c0003	1593	7	7	0	0	0	0	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	c0004	1593	5	4	1	0	0	0	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	c0005	1593	3	0	0	3	0	0	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	c0006	1593	2	0	0	0	1	1	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	c0007	1593	1	0	0	1	0	0	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	c0008	1593	1	1	0	0	0	0	copy fasta	CATSPER2	chr15	43623503	43653844