JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CATSPER2_chr15_43623503_43653844	0/0	c0009	1593	1	1	0	0	0	0	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/1	c0010	1593	1	0	0	0	0	0	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	c0011	1593	1	0	0	1	0	0	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER2_chr15_43623503_43653844	0/0	c0012	1593	1	1	0	0	0	0	copy fasta	CATSPER2	chr15	43623503	43653844
CATSPER3_chr5_134962907_135016696	0/0	c0001	1197	145	12	21	87	3	22	copy fasta	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	c0002	1197	93	13	24	42	5	9	copy fasta	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	1/1	c0003	1197	76	14	21	30	2	7	copy fasta	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	c0004	1197	28	22	6	0	0	0	copy fasta	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	c0005	1197	20	18	2	0	0	0	copy fasta	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	c0006	1197	6	6	0	0	0	0	copy fasta	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	c0007	1197	2	1	1	0	0	0	copy fasta	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	c0008	1197	2	1	0	0	1	0	copy fasta	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	c0009	1197	2	0	1	0	1	0	copy fasta	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	c0010	1197	1	1	0	0	0	0	copy fasta	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	c0011	1197	1	1	0	0	0	0	copy fasta	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	c0012	1197	1	0	1	0	0	0	copy fasta	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	c0013	1197	1	0	0	1	0	0	copy fasta	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	c0014	1197	1	1	0	0	0	0	copy fasta	CATSPER3	chr5	134962907	135016696
CATSPER3_chr5_134962907_135016696	0/0	c0015	1197	1	0	1	0	0	0	copy fasta	CATSPER3	chr5	134962907	135016696
CATSPER4_chr1_26185602_26207964	1/0	c0001	1419	243	35	43	140	7	17	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	c0002	1419	51	28	10	1	2	10	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	c0003	1419	41	1	7	23	1	9	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	c0004	1419	20	15	4	1	0	0	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/1	c0005	1419	7	0	1	0	4	1	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	c0006	1419	7	0	4	0	0	3	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	c0007	1419	4	0	0	4	0	0	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	c0008	1419	4	0	2	0	0	2	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	c0009	1419	4	0	1	3	0	0	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	c0010	1419	3	0	3	0	0	0	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	c0011	1419	3	3	0	0	0	0	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	c0012	1419	3	3	0	0	0	0	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	c0013	1419	2	1	1	0	0	0	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	c0014	1419	1	0	1	0	0	0	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	c0015	1419	1	1	0	0	0	0	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	c0016	1419	1	0	0	1	0	0	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	c0017	1419	1	0	1	0	0	0	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	c0018	1419	1	1	0	0	0	0	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPER4_chr1_26185602_26207964	0/0	c0019	1419	1	0	0	1	0	0	copy fasta	CATSPER4	chr1	26185602	26207964
CATSPERB_chr14_91575698_91737086	0/0	c0001	3351	184	35	27	89	8	25	copy fasta	CATSPERB	chr14	91575698	91737086
CATSPERB_chr14_91575698_91737086	0/1	c0002	3351	49	28	11	3	2	4	copy fasta	CATSPERB	chr14	91575698	91737086
CATSPERB_chr14_91575698_91737086	0/0	c0003	3351	22	1	1	19	0	1	copy fasta	CATSPERB	chr14	91575698	91737086
CATSPERB_chr14_91575698_91737086	0/0	c0004	3351	9	9	0	0	0	0	copy fasta	CATSPERB	chr14	91575698	91737086
CATSPERB_chr14_91575698_91737086	0/0	c0005	3351	2	0	0	0	2	0	copy fasta	CATSPERB	chr14	91575698	91737086
CATSPERB_chr14_91575698_91737086	0/0	c0006	3351	1	1	0	0	0	0	copy fasta	CATSPERB	chr14	91575698	91737086
CATSPERB_chr14_91575698_91737086	0/0	c0007	3351	1	0	0	1	0	0	copy fasta	CATSPERB	chr14	91575698	91737086
CATSPERB_chr14_91575698_91737086	0/0	c0008	3546	1	0	1	0	0	0	copy fasta	CATSPERB	chr14	91575698	91737086
CATSPERB_chr14_91575698_91737086	0/0	c0009	3351	1	1	0	0	0	0	copy fasta	CATSPERB	chr14	91575698	91737086
CATSPERB_chr14_91575698_91737086	0/0	c0010	3351	1	1	0	0	0	0	copy fasta	CATSPERB	chr14	91575698	91737086
CATSPERD_chr19_5715637_5783734	1/0	c0001	2397	93	37	30	5	8	12	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/1	c0002	2397	77	1	25	36	2	12	copy fasta	CATSPERD	chr19	5715637	5783734