JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CATSPERD_chr19_5715637_5783734	0/0	c0003	2397	45	1	3	38	0	3	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0004	2397	42	14	6	14	1	7	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0005	2397	10	0	0	9	0	1	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0006	2397	7	6	1	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0007	2397	5	5	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0008	2397	3	3	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0009	2397	3	3	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0010	2397	3	0	2	1	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0011	2397	3	2	0	0	0	1	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0012	2397	3	0	0	0	2	1	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0013	2397	2	2	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0014	2397	2	2	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0015	2397	2	2	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0016	2397	2	0	1	0	0	1	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0017	2397	2	2	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0018	2397	2	2	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0019	2397	2	0	1	1	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0020	2397	1	1	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0021	2397	1	0	0	0	0	1	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0022	2397	1	1	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0023	2397	1	0	0	0	0	1	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0024	2397	1	0	0	1	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0025	2397	1	0	1	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0026	2397	1	1	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0027	2397	1	0	0	0	0	1	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0028	2397	1	1	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0029	2397	1	0	0	1	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0030	2397	1	0	0	1	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0031	2397	1	0	0	1	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0032	2397	1	1	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0033	2397	1	0	0	0	0	1	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0034	2397	1	1	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0035	2397	1	0	0	0	0	1	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0036	2397	1	1	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0037	2397	1	0	0	0	1	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0038	2397	1	1	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0039	2397	1	0	0	0	0	1	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0040	2397	1	0	0	1	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0041	2397	1	0	0	1	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0042	2397	1	0	0	1	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0043	2397	1	1	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0044	2397	1	0	0	1	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0045	2397	1	0	1	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0046	2397	1	0	1	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERD_chr19_5715637_5783734	0/0	c0047	2397	1	1	0	0	0	0	copy fasta	CATSPERD	chr19	5715637	5783734
CATSPERE_chr1_244456273_244645504	1/1	c0001	2856	108	18	17	52	3	16	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	c0002	2856	27	11	3	9	2	2	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	c0003	2856	19	17	2	0	0	0	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	c0004	2856	14	12	2	0	0	0	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	c0005	2856	6	0	0	6	0	0	copy fasta	CATSPERE	chr1	244456273	244645504