JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CATSPERE_chr1_244456273_244645504	0/0	c0006	2856	5	2	1	0	1	1	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	c0007	2856	4	4	0	0	0	0	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	c0008	2856	3	0	0	0	2	1	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	c0009	2856	3	3	0	0	0	0	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	c0010	2856	2	2	0	0	0	0	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	c0011	2856	2	2	0	0	0	0	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	c0012	2856	1	0	0	1	0	0	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	c0013	2856	1	1	0	0	0	0	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	c0014	2856	1	0	0	1	0	0	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	c0015	2856	1	1	0	0	0	0	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	c0016	2856	1	1	0	0	0	0	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	c0017	2856	1	1	0	0	0	0	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	c0018	2856	1	0	0	1	0	0	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	c0019	2856	1	1	0	0	0	0	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	c0020	2856	1	1	0	0	0	0	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	c0021	2856	1	1	0	0	0	0	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	c0022	2856	1	1	0	0	0	0	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	c0023	2856	1	1	0	0	0	0	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERE_chr1_244456273_244645504	0/0	c0024	2856	1	0	1	0	0	0	copy fasta	CATSPERE	chr1	244456273	244645504
CATSPERG_chr19_38330830_38375943	1/0	c0001	3480	89	48	9	25	2	4	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/1	c0002	3480	72	3	17	34	6	11	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	c0003	3480	64	2	20	26	1	15	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	c0004	3480	53	9	6	38	0	0	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	c0005	3480	49	1	6	33	1	8	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	c0006	3480	14	0	0	14	0	0	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	c0007	3480	5	2	2	0	0	1	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	c0008	3480	5	5	0	0	0	0	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	c0009	3480	3	3	0	0	0	0	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	c0010	3480	2	0	0	2	0	0	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	c0011	3480	2	0	0	2	0	0	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	c0012	3480	2	2	0	0	0	0	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	c0013	3480	2	0	2	0	0	0	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	c0014	3461	1	0	1	0	0	0	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	c0015	3480	1	1	0	0	0	0	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	c0016	3480	1	0	0	1	0	0	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	c0017	3480	1	0	0	0	0	1	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	c0018	3480	1	0	0	1	0	0	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	c0019	3480	1	0	0	1	0	0	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	c0020	3509	1	0	0	1	0	0	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	c0021	3480	1	0	1	0	0	0	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	c0022	3480	1	0	0	0	0	1	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	c0023	3480	1	0	0	1	0	0	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	c0024	3480	1	0	0	0	0	1	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	c0025	3480	1	0	0	1	0	0	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	c0026	3480	1	1	0	0	0	0	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERG_chr19_38330830_38375943	0/0	c0027	3480	1	1	0	0	0	0	copy fasta	CATSPERG	chr19	38330830	38375943
CATSPERZ_chr11_64295358_64309770	1/1	c0001	603	350	89	63	145	9	42	copy fasta	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	c0002	603	28	4	8	13	3	0	copy fasta	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	c0003	603	6	1	0	5	0	0	copy fasta	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	c0004	603	4	0	3	0	1	0	copy fasta	CATSPERZ	chr11	64295358	64309770