JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CATSPERZ_chr11_64295358_64309770	0/0	c0005	603	1	0	0	0	1	0	copy fasta	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	c0006	603	1	0	1	0	0	0	copy fasta	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	c0007	603	1	0	0	1	0	0	copy fasta	CATSPERZ	chr11	64295358	64309770
CATSPERZ_chr11_64295358_64309770	0/0	c0008	603	1	0	1	0	0	0	copy fasta	CATSPERZ	chr11	64295358	64309770
CAT_chr11_34433934_34477060	1/1	c0001	1584	257	60	54	101	9	31	copy fasta	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	c0002	1584	142	12	22	96	7	5	copy fasta	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	c0003	1584	21	14	0	7	0	0	copy fasta	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	c0004	1584	1	1	0	0	0	0	copy fasta	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	c0005	1584	1	0	0	1	0	0	copy fasta	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	c0006	1584	1	0	0	1	0	0	copy fasta	CAT	chr11	34433934	34477060
CAT_chr11_34433934_34477060	0/0	c0007	1584	1	1	0	0	0	0	copy fasta	CAT	chr11	34433934	34477060
CAV1_chr7_116520036_116566179	1/1	c0001	537	329	71	70	130	16	40	copy fasta	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	c0002	537	11	11	0	0	0	0	copy fasta	CAV1	chr7	116520036	116566179
CAV1_chr7_116520036_116566179	0/0	c0003	537	2	0	0	2	0	0	copy fasta	CAV1	chr7	116520036	116566179
CAV2_chr7_116494738_116513541	1/0	c0001	489	311	70	57	142	11	30	copy fasta	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/1	c0002	489	54	22	15	1	3	12	copy fasta	CAV2	chr7	116494738	116513541
CAV2_chr7_116494738_116513541	0/0	c0003	489	9	0	0	9	0	0	copy fasta	CAV2	chr7	116494738	116513541
CAV3_chr3_8728802_8751758	1/1	c0001	456	272	27	55	145	8	35	copy fasta	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	c0002	456	139	27	18	78	6	10	copy fasta	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	c0003	456	19	8	5	1	2	3	copy fasta	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	c0004	456	14	11	3	0	0	0	copy fasta	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	c0005	456	14	14	0	0	0	0	copy fasta	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	c0006	456	7	7	0	0	0	0	copy fasta	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	c0007	456	5	1	1	1	2	0	copy fasta	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	c0008	456	4	4	0	0	0	0	copy fasta	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	c0009	456	1	0	0	1	0	0	copy fasta	CAV3	chr3	8728802	8751758
CAV3_chr3_8728802_8751758	0/0	c0010	456	1	1	0	0	0	0	copy fasta	CAV3	chr3	8728802	8751758
CAVIN1_chr17_42397449_42428256	1/1	c0001	1173	317	77	49	144	12	33	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	c0002	1173	7	6	1	0	0	0	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	c0003	1173	5	5	0	0	0	0	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	c0004	1173	2	0	0	0	0	2	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	c0005	1173	1	0	0	0	0	1	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	c0006	1173	1	0	0	1	0	0	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	c0007	1173	1	1	0	0	0	0	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	c0008	1173	1	0	0	1	0	0	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	c0009	1173	1	0	0	1	0	0	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	c0010	1173	1	0	0	1	0	0	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN1_chr17_42397449_42428256	0/0	c0011	1191	1	1	0	0	0	0	copy fasta	CAVIN1	chr17	42397449	42428256
CAVIN2_chr2_191829310_191852088	0/0	c0001	1278	201	21	43	108	6	23	copy fasta	CAVIN2	chr2	191829310	191852088
CAVIN2_chr2_191829310_191852088	1/0	c0002	1278	140	46	14	52	8	19	copy fasta	CAVIN2	chr2	191829310	191852088
CAVIN2_chr2_191829310_191852088	0/0	c0003	1278	18	9	8	0	1	0	copy fasta	CAVIN2	chr2	191829310	191852088
CAVIN2_chr2_191829310_191852088	0/0	c0004	1278	6	6	0	0	0	0	copy fasta	CAVIN2	chr2	191829310	191852088
CAVIN2_chr2_191829310_191852088	0/1	c0005	1278	6	0	1	2	0	2	copy fasta	CAVIN2	chr2	191829310	191852088
CAVIN2_chr2_191829310_191852088	0/0	c0006	1278	1	1	0	0	0	0	copy fasta	CAVIN2	chr2	191829310	191852088
CAVIN2_chr2_191829310_191852088	0/0	c0007	1278	1	1	0	0	0	0	copy fasta	CAVIN2	chr2	191829310	191852088
CAVIN2_chr2_191829310_191852088	0/0	c0008	1278	1	1	0	0	0	0	copy fasta	CAVIN2	chr2	191829310	191852088
CAVIN2_chr2_191829310_191852088	0/0	c0009	1278	1	1	0	0	0	0	copy fasta	CAVIN2	chr2	191829310	191852088
CAVIN2_chr2_191829310_191852088	0/0	c0010	1278	1	0	0	1	0	0	copy fasta	CAVIN2	chr2	191829310	191852088
CAVIN2_chr2_191829310_191852088	0/0	c0011	1278	1	1	0	0	0	0	copy fasta	CAVIN2	chr2	191829310	191852088
CAVIN2_chr2_191829310_191852088	0/0	c0012	1278	1	1	0	0	0	0	copy fasta	CAVIN2	chr2	191829310	191852088