JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CAVIN2_chr2_191829310_191852088	0/0	c0013	1278	1	0	0	1	0	0	copy fasta	CAVIN2	chr2	191829310	191852088
CAVIN2_chr2_191829310_191852088	0/0	c0014	1278	1	0	0	0	1	0	copy fasta	CAVIN2	chr2	191829310	191852088
CAVIN2_chr2_191829310_191852088	0/0	c0015	1278	1	1	0	0	0	0	copy fasta	CAVIN2	chr2	191829310	191852088
CAVIN2_chr2_191829310_191852088	0/0	c0016	1278	1	1	0	0	0	0	copy fasta	CAVIN2	chr2	191829310	191852088
CAVIN3_chr11_6313946_6325501	0/1	c0001	786	183	32	22	98	13	17	copy fasta	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	c0002	786	136	18	31	66	4	17	copy fasta	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	c0003	786	36	4	8	22	1	1	copy fasta	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	c0004	786	17	10	5	0	0	2	copy fasta	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	c0005	786	11	7	3	0	0	1	copy fasta	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	c0006	786	9	7	0	1	0	1	copy fasta	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	c0007	786	6	6	0	0	0	0	copy fasta	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	1/0	c0008	786	6	2	3	0	0	0	copy fasta	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	c0009	786	5	0	0	5	0	0	copy fasta	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	c0010	786	5	0	0	5	0	0	copy fasta	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	c0011	765	2	0	1	1	0	0	copy fasta	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	c0012	786	2	0	2	0	0	0	copy fasta	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	c0013	786	1	0	1	0	0	0	copy fasta	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	c0014	786	1	0	0	0	0	1	copy fasta	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	c0015	786	1	1	0	0	0	0	copy fasta	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	c0016	786	1	0	1	0	0	0	copy fasta	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	c0017	786	1	0	0	1	0	0	copy fasta	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	c0018	786	1	0	0	1	0	0	copy fasta	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	c0019	786	1	0	1	0	0	0	copy fasta	CAVIN3	chr11	6313946	6325501
CAVIN3_chr11_6313946_6325501	0/0	c0020	786	1	1	0	0	0	0	copy fasta	CAVIN3	chr11	6313946	6325501
CAVIN4_chr9_100573079_100593389	1/1	c0001	1095	229	60	38	100	9	20	copy fasta	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	c0002	1095	77	24	21	11	9	12	copy fasta	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	c0003	1095	60	6	4	39	0	11	copy fasta	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	c0004	1095	7	0	7	0	0	0	copy fasta	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	c0005	1095	2	2	0	0	0	0	copy fasta	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	c0006	1095	1	1	0	0	0	0	copy fasta	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	c0007	1095	1	0	0	0	0	1	copy fasta	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	c0008	1095	1	0	0	1	0	0	copy fasta	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	c0009	1095	1	1	0	0	0	0	copy fasta	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	c0010	1095	1	0	0	1	0	0	copy fasta	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	c0011	1095	1	1	0	0	0	0	copy fasta	CAVIN4	chr9	100573079	100593389
CAVIN4_chr9_100573079_100593389	0/0	c0012	1095	1	1	0	0	0	0	copy fasta	CAVIN4	chr9	100573079	100593389
CBARP_chr19_1223287_1243005	0/1	c0001	2118	192	34	28	106	6	17	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	1/0	c0002	2118	95	35	35	1	8	15	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	c0003	2118	28	0	9	17	1	1	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	c0004	2118	26	11	1	10	1	3	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	c0005	2118	12	0	0	12	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	c0006	2119	8	0	0	6	0	2	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	c0007	2118	6	6	0	0	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	c0008	2119	4	0	1	3	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	c0009	2119	3	1	0	0	0	2	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	c0010	2118	3	2	1	0	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	c0011	2118	2	0	0	2	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	c0012	2119	2	0	0	2	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	c0013	2118	2	0	0	2	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	c0014	2119	2	0	0	2	0	0	copy fasta	CBARP	chr19	1223287	1243005