JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CBARP_chr19_1223287_1243005	0/0	c0015	2119	2	1	0	1	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	c0016	2118	2	0	0	0	0	2	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	c0017	2118	1	0	0	0	1	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	c0018	2118	1	0	0	1	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	c0019	2118	1	1	0	0	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	c0020	2118	1	1	0	0	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	c0021	2118	1	0	0	0	0	1	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	c0022	2119	1	0	0	1	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	c0023	2118	1	0	0	0	1	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	c0024	2118	1	0	1	0	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	c0025	2119	1	0	0	1	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	c0026	2119	1	0	0	1	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	c0027	2119	1	0	0	1	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	c0028	2138	1	0	1	0	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	c0029	2118	1	1	0	0	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	c0030	2118	1	0	0	1	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	c0031	2118	1	0	1	0	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	c0032	2118	1	0	0	1	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	c0033	2118	1	0	0	1	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	c0034	2118	1	0	0	0	0	1	copy fasta	CBARP	chr19	1223287	1243005
CBARP_chr19_1223287_1243005	0/0	c0035	2118	1	1	0	0	0	0	copy fasta	CBARP	chr19	1223287	1243005
CBFA2T2_chr20_33485096_33655030	0/0	c0001	1788	205	72	32	71	8	22	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	1/1	c0002	1788	70	6	16	27	4	15	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	c0003	1788	11	0	0	11	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	c0004	1788	4	1	1	0	0	2	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	c0005	1788	3	0	1	1	0	1	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	c0006	1788	1	1	0	0	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	c0007	1788	1	0	0	1	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	c0008	1788	1	0	0	1	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	c0009	1788	1	1	0	0	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T2_chr20_33485096_33655030	0/0	c0010	1788	1	1	0	0	0	0	copy fasta	CBFA2T2	chr20	33485096	33655030
CBFA2T3_chr16_88869858_88982207	1/1	c0001	1962	238	40	58	93	11	34	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	c0002	1962	9	8	1	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	c0003	1962	9	4	0	3	0	2	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	c0004	1962	3	0	3	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	c0005	1962	2	2	0	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	c0006	1962	2	0	0	2	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	c0007	1962	2	0	2	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	c0008	1962	2	2	0	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	c0009	1962	2	2	0	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	c0010	1962	2	2	0	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	c0011	1962	1	0	0	1	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	c0012	1962	1	0	1	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	c0013	1962	1	0	0	1	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	c0014	1962	1	1	0	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	c0015	1962	1	1	0	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	c0016	1962	1	1	0	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	c0017	1962	1	0	0	0	1	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	c0018	1962	1	0	1	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	c0019	1962	1	0	0	1	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207