Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACOT1_chr14_73532143_73548796	0/0	c0007	1266	1	0	0	1	0	0	copy fasta	ACOT1	chr14	73532143	73548796
ACOT1_chr14_73532143_73548796	0/0	c0008	1265	1	1	0	0	0	0	copy fasta	ACOT1	chr14	73532143	73548796
ACOT1_chr14_73532143_73548796	0/0	c0009	1266	1	0	0	0	0	1	copy fasta	ACOT1	chr14	73532143	73548796
ACOT1_chr14_73532143_73548796	0/0	c0010	1266	1	1	0	0	0	0	copy fasta	ACOT1	chr14	73532143	73548796
ACOT1_chr14_73532143_73548796	0/0	c0011	1266	1	1	0	0	0	0	copy fasta	ACOT1	chr14	73532143	73548796
ACOT1_chr14_73532143_73548796	0/0	c0012	1266	1	1	0	0	0	0	copy fasta	ACOT1	chr14	73532143	73548796
ACOT1_chr14_73532143_73548796	0/0	c0013	1266	1	1	0	0	0	0	copy fasta	ACOT1	chr14	73532143	73548796
ACOT1_chr14_73532143_73548796	0/0	c0014	1266	1	0	0	0	0	1	copy fasta	ACOT1	chr14	73532143	73548796
ACOT2_chr14_73564213_73580655	0/0	c0001	1452	254	26	39	164	5	20	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	c0002	1452	58	35	15	0	5	3	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	c0003	1452	42	11	13	4	4	10	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	c0004	1452	23	7	5	9	0	2	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	c0005	1452	9	0	1	5	0	3	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	c0006	1452	6	5	1	0	0	0	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	c0007	1452	6	5	1	0	0	0	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	c0008	1452	4	0	1	1	0	2	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	c0009	1452	3	0	0	3	0	0	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	c0010	1452	2	0	0	0	0	2	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	c0011	1452	2	0	1	0	0	1	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	c0012	1453	1	0	0	1	0	0	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	c0013	1452	1	0	0	1	0	0	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	c0014	1452	1	1	0	0	0	0	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	c0015	1451	1	0	0	1	0	0	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	c0016	1452	1	0	0	1	0	0	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	c0017	1452	1	0	0	0	0	1	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	c0018	1456	1	0	0	1	0	0	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	c0019	1452	1	1	0	0	0	0	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	c0020	1453	1	0	0	1	0	0	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	c0021	1452	1	1	0	0	0	0	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	c0022	1452	1	0	0	1	0	0	copy fasta	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	c0023	1452	1	0	0	1	0	0	copy fasta	ACOT2	chr14	73564213	73580655
ACOT4_chr14_73586873_73600766	0/0	c0001	1266	187	11	42	109	5	20	copy fasta	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	c0002	1266	151	69	16	61	1	4	copy fasta	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	1/1	c0003	1266	29	0	13	2	4	8	copy fasta	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	c0004	1266	14	0	5	1	4	4	copy fasta	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	c0005	1266	10	0	2	5	0	3	copy fasta	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	c0006	1266	5	0	0	5	0	0	copy fasta	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	c0007	1266	2	0	0	2	0	0	copy fasta	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	c0008	1266	2	2	0	0	0	0	copy fasta	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	c0009	1266	2	2	0	0	0	0	copy fasta	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	c0010	1266	2	0	0	2	0	0	copy fasta	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	c0011	1266	1	0	0	0	0	1	copy fasta	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	c0012	1266	1	0	0	1	0	0	copy fasta	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	c0013	1266	1	1	0	0	0	0	copy fasta	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	c0014	1266	1	1	0	0	0	0	copy fasta	ACOT4	chr14	73586873	73600766
ACOT6_chr14_73607517_73624888	0/0	c0001	1266	199	22	34	117	5	21	copy fasta	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	c0002	1266	82	26	8	44	1	3	copy fasta	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	1/1	c0003	1266	79	17	23	20	4	13	copy fasta	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	c0004	1266	11	10	1	0	0	0	copy fasta	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	c0005	1266	5	5	0	0	0	0	copy fasta	ACOT6	chr14	73607517	73624888