JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CBFA2T3_chr16_88869858_88982207	0/0	c0020	1962	1	1	0	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	c0021	1962	1	1	0	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	c0022	1962	1	0	0	1	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFA2T3_chr16_88869858_88982207	0/0	c0023	1962	1	1	0	0	0	0	copy fasta	CBFA2T3	chr16	88869858	88982207
CBFB_chr16_67024149_67106058	1/1	c0001	564	191	78	35	50	6	20	copy fasta	CBFB	chr16	67024149	67106058
CBFB_chr16_67024149_67106058	0/0	c0002	564	21	12	1	6	0	2	copy fasta	CBFB	chr16	67024149	67106058
CBLB_chr3_105650461_105874012	0/0	c0001	2949	198	41	34	95	12	16	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/1	c0002	2949	87	14	20	44	1	7	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	c0003	2949	36	0	4	30	0	2	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	1/0	c0004	2949	14	4	3	0	1	5	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	c0005	2949	7	6	1	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	c0006	2949	6	0	0	6	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	c0007	2949	5	5	0	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	c0008	2949	4	0	0	4	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	c0009	2949	3	0	0	3	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	c0010	2949	2	0	2	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	c0011	2949	2	1	1	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	c0012	2949	2	2	0	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	c0013	2949	2	2	0	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	c0014	2949	2	2	0	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	c0015	2949	1	1	0	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	c0016	2949	1	0	0	1	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	c0017	2949	1	1	0	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	c0018	2949	1	1	0	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	c0019	2949	1	1	0	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	c0020	2949	1	0	1	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	c0021	2949	1	0	0	0	0	1	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	c0022	2949	1	0	0	0	0	1	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	c0023	2949	1	1	0	0	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLB_chr3_105650461_105874012	0/0	c0024	2949	1	0	0	1	0	0	copy fasta	CBLB	chr3	105650461	105874012
CBLC_chr19_44772890_44805652	1/1	c0001	1425	241	36	48	125	5	25	copy fasta	CBLC	chr19	44772890	44805652
CBLC_chr19_44772890_44805652	0/0	c0002	1426	29	8	1	18	0	2	copy fasta	CBLC	chr19	44772890	44805652
CBLC_chr19_44772890_44805652	0/0	c0003	1425	20	6	5	6	0	3	copy fasta	CBLC	chr19	44772890	44805652
CBLC_chr19_44772890_44805652	0/0	c0004	1426	11	10	0	0	0	1	copy fasta	CBLC	chr19	44772890	44805652
CBLC_chr19_44772890_44805652	0/0	c0005	1425	9	5	2	0	1	1	copy fasta	CBLC	chr19	44772890	44805652
CBLC_chr19_44772890_44805652	0/0	c0006	1425	7	7	0	0	0	0	copy fasta	CBLC	chr19	44772890	44805652
CBLC_chr19_44772890_44805652	0/0	c0007	1426	6	5	1	0	0	0	copy fasta	CBLC	chr19	44772890	44805652
CBLC_chr19_44772890_44805652	0/0	c0008	1425	4	4	0	0	0	0	copy fasta	CBLC	chr19	44772890	44805652
CBLC_chr19_44772890_44805652	0/0	c0009	1425	3	3	0	0	0	0	copy fasta	CBLC	chr19	44772890	44805652
CBLC_chr19_44772890_44805652	0/0	c0010	1425	3	3	0	0	0	0	copy fasta	CBLC	chr19	44772890	44805652
CBLC_chr19_44772890_44805652	0/0	c0011	1425	2	2	0	0	0	0	copy fasta	CBLC	chr19	44772890	44805652
CBLC_chr19_44772890_44805652	0/0	c0012	1425	2	2	0	0	0	0	copy fasta	CBLC	chr19	44772890	44805652
CBLC_chr19_44772890_44805652	0/0	c0013	1425	1	1	0	0	0	0	copy fasta	CBLC	chr19	44772890	44805652
CBLC_chr19_44772890_44805652	0/0	c0014	1425	1	0	0	1	0	0	copy fasta	CBLC	chr19	44772890	44805652
CBLC_chr19_44772890_44805652	0/0	c0015	1425	1	0	1	0	0	0	copy fasta	CBLC	chr19	44772890	44805652
CBLC_chr19_44772890_44805652	0/0	c0016	1425	1	0	0	1	0	0	copy fasta	CBLC	chr19	44772890	44805652
CBLC_chr19_44772890_44805652	0/0	c0017	1426	1	1	0	0	0	0	copy fasta	CBLC	chr19	44772890	44805652
CBLC_chr19_44772890_44805652	0/0	c0018	1425	1	0	0	1	0	0	copy fasta	CBLC	chr19	44772890	44805652
CBLC_chr19_44772890_44805652	0/0	c0019	1425	1	1	0	0	0	0	copy fasta	CBLC	chr19	44772890	44805652
CBLIF_chr11_59824273_59850499	1/1	c0001	1254	240	37	52	114	17	18	copy fasta	CBLIF	chr11	59824273	59850499