JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CBX2_chr17_79773148_79792983	1/0	c0001	1599	171	21	37	85	5	22	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	c0002	1599	162	44	22	79	5	12	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/1	c0003	1599	73	4	15	34	7	12	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	c0004	1599	26	24	2	0	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	c0005	1599	8	0	4	4	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	c0006	1599	5	0	0	5	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	c0007	1599	3	2	1	0	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	c0008	1599	3	2	1	0	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	c0009	1599	2	0	0	0	0	2	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	c0010	1599	2	1	1	0	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	c0011	1599	1	0	0	0	0	1	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	c0012	1599	1	0	0	0	0	1	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	c0013	1599	1	0	0	0	1	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	c0014	1599	1	1	0	0	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	c0015	1599	1	0	0	1	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	c0016	1599	1	0	0	1	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	c0017	1599	1	0	0	1	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	c0018	1599	1	1	0	0	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	c0019	1599	1	0	1	0	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	c0020	1599	1	0	1	0	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX2_chr17_79773148_79792983	0/0	c0021	1599	1	0	1	0	0	0	copy fasta	CBX2	chr17	79773148	79792983
CBX3_chr7_26196745_26218607	1/1	c0001	552	410	94	66	200	10	38	copy fasta	CBX3	chr7	26196745	26218607
CBX4_chr17_79828156_79844440	1/1	c0001	1683	323	68	50	160	10	33	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	c0002	1684	31	5	7	18	0	1	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	c0003	1689	20	4	7	0	2	7	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	c0004	1686	15	2	4	2	2	5	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	c0005	1683	12	6	4	0	0	2	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	c0006	1674	3	0	0	3	0	0	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	c0007	1683	2	2	0	0	0	0	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	c0008	1689	2	1	1	0	0	0	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	c0009	1684	2	1	1	0	0	0	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	c0010	1683	2	0	1	0	0	1	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	c0011	1683	2	1	1	0	0	0	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	c0012	1689	1	1	0	0	0	0	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	c0013	1687	1	0	0	1	0	0	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	c0014	1692	1	0	0	0	0	1	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	c0015	1683	1	0	0	1	0	0	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	c0016	1683	1	0	0	1	0	0	copy fasta	CBX4	chr17	79828156	79844440
CBX4_chr17_79828156_79844440	0/0	c0017	1683	1	1	0	0	0	0	copy fasta	CBX4	chr17	79828156	79844440
CBX5_chr12_54225942_54285122	1/1	c0001	576	367	91	66	154	16	38	copy fasta	CBX5	chr12	54225942	54285122
CBX5_chr12_54225942_54285122	0/0	c0002	576	1	1	0	0	0	0	copy fasta	CBX5	chr12	54225942	54285122
CBX6_chr22_38856422_38877216	1/1	c0001	1239	362	77	71	158	16	38	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	c0002	1240	11	5	1	4	0	1	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	c0003	1239	11	10	1	0	0	0	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	c0004	1240	7	1	1	4	0	1	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	c0005	1240	6	1	0	5	0	0	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	c0006	1241	2	0	0	2	0	0	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	c0007	1241	1	1	0	0	0	0	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	c0008	1239	1	1	0	0	0	0	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	c0009	1239	1	1	0	0	0	0	copy fasta	CBX6	chr22	38856422	38877216