JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CBX6_chr22_38856422_38877216	0/0	c0010	1239	1	1	0	0	0	0	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	c0011	1239	1	1	0	0	0	0	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	c0012	1239	1	1	0	0	0	0	copy fasta	CBX6	chr22	38856422	38877216
CBX6_chr22_38856422_38877216	0/0	c0013	1239	1	0	0	1	0	0	copy fasta	CBX6	chr22	38856422	38877216
CBX7_chr22_39125772_39157680	1/1	c0001	756	378	90	66	158	14	48	copy fasta	CBX7	chr22	39125772	39157680
CBX7_chr22_39125772_39157680	0/0	c0002	756	2	0	2	0	0	0	copy fasta	CBX7	chr22	39125772	39157680
CBX8_chr17_79787132_79802077	0/1	c0001	1170	228	85	47	64	8	23	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	1/0	c0002	1170	160	10	24	94	6	25	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	c0003	1171	7	2	2	3	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	c0004	1171	3	1	1	1	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	c0005	1170	2	0	2	0	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	c0006	1170	2	0	1	1	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	c0007	1170	2	0	2	0	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	c0008	1170	1	0	0	1	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	c0009	1170	1	0	0	1	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	c0010	1170	1	0	1	0	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	c0011	1170	1	1	0	0	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	c0012	1170	1	0	0	1	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	c0013	1170	1	1	0	0	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	c0014	1170	1	0	0	1	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBX8_chr17_79787132_79802077	0/0	c0015	1170	1	0	0	1	0	0	copy fasta	CBX8	chr17	79787132	79802077
CBY1_chr22_38651638_38678850	1/0	c0001	381	264	62	51	108	15	27	copy fasta	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/1	c0002	381	117	29	11	62	3	11	copy fasta	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	c0003	381	1	0	0	1	0	0	copy fasta	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	c0004	381	1	0	0	1	0	0	copy fasta	CBY1	chr22	38651638	38678850
CBY1_chr22_38651638_38678850	0/0	c0005	381	1	1	0	0	0	0	copy fasta	CBY1	chr22	38651638	38678850
CBY2_chr13_45697320_45719559	1/1	c0001	1347	189	37	32	97	4	17	copy fasta	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	c0002	1347	157	28	30	70	11	18	copy fasta	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	c0003	1347	34	1	4	24	2	3	copy fasta	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	c0004	1347	21	15	5	0	0	1	copy fasta	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	c0005	1347	12	12	0	0	0	0	copy fasta	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	c0006	1347	6	0	0	0	0	6	copy fasta	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	c0007	1347	3	0	0	3	0	0	copy fasta	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	c0008	1347	2	0	0	2	0	0	copy fasta	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	c0009	1347	2	1	1	0	0	0	copy fasta	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	c0010	1347	2	0	0	0	0	2	copy fasta	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	c0011	1347	2	1	1	0	0	0	copy fasta	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	c0012	1347	2	0	2	0	0	0	copy fasta	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	c0013	1347	1	0	1	0	0	0	copy fasta	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	c0014	1347	1	0	0	1	0	0	copy fasta	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	c0015	1333	1	0	0	1	0	0	copy fasta	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	c0016	1347	1	1	0	0	0	0	copy fasta	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	c0017	1347	1	0	0	0	0	1	copy fasta	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	c0018	1347	1	0	0	0	1	0	copy fasta	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	c0019	1347	1	0	0	1	0	0	copy fasta	CBY2	chr13	45697320	45719559
CBY2_chr13_45697320_45719559	0/0	c0020	1347	1	0	0	1	0	0	copy fasta	CBY2	chr13	45697320	45719559
CBY3_chr5_179673560_179686034	1/1	c0001	729	382	67	74	179	18	42	copy fasta	CBY3	chr5	179673560	179686034
CBY3_chr5_179673560_179686034	0/0	c0002	729	17	16	1	0	0	0	copy fasta	CBY3	chr5	179673560	179686034
CBY3_chr5_179673560_179686034	0/0	c0003	729	4	3	1	0	0	0	copy fasta	CBY3	chr5	179673560	179686034
CBY3_chr5_179673560_179686034	0/0	c0004	729	3	3	0	0	0	0	copy fasta	CBY3	chr5	179673560	179686034