JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CBY3_chr5_179673560_179686034	0/0	c0005	729	1	1	0	0	0	0	copy fasta	CBY3	chr5	179673560	179686034
CBY3_chr5_179673560_179686034	0/0	c0006	729	1	1	0	0	0	0	copy fasta	CBY3	chr5	179673560	179686034
CBY3_chr5_179673560_179686034	0/0	c0007	729	1	1	0	0	0	0	copy fasta	CBY3	chr5	179673560	179686034
CBY3_chr5_179673560_179686034	0/0	c0008	729	1	1	0	0	0	0	copy fasta	CBY3	chr5	179673560	179686034
CBY3_chr5_179673560_179686034	0/0	c0009	729	1	0	0	1	0	0	copy fasta	CBY3	chr5	179673560	179686034
CBY3_chr5_179673560_179686034	0/0	c0010	729	1	1	0	0	0	0	copy fasta	CBY3	chr5	179673560	179686034
CC2D1A_chr19_13901201_13935879	0/0	c0001	2856	111	37	16	43	4	11	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	1/1	c0002	2856	110	14	21	54	3	16	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	c0003	2856	50	0	5	30	5	10	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	c0004	2856	28	0	15	8	2	3	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	c0005	2856	21	20	0	0	0	1	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	c0006	2856	8	8	0	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	c0007	2856	8	0	2	6	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	c0008	2856	5	0	0	5	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	c0009	2856	3	3	0	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	c0010	2856	2	2	0	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	c0011	2856	2	2	0	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	c0012	2856	2	0	0	2	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	c0013	2856	1	0	1	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	c0014	2856	1	1	0	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	c0015	2856	1	1	0	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	c0016	2856	1	1	0	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	c0017	2856	1	1	0	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	c0018	2856	1	0	1	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	c0019	2856	1	1	0	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	c0020	2856	1	0	0	1	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	c0021	2856	1	0	0	1	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	c0022	2856	1	0	0	1	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	c0023	2856	1	1	0	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	c0024	2856	1	0	1	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	c0025	2856	1	0	1	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	c0026	2856	1	1	0	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	c0027	2856	1	1	0	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	c0028	2856	1	1	0	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	c0029	2856	1	0	0	1	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	c0030	2856	1	0	1	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	c0031	2856	1	1	0	0	0	0	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1A_chr19_13901201_13935879	0/0	c0032	2856	1	0	0	0	0	1	copy fasta	CC2D1A	chr19	13901201	13935879
CC2D1B_chr1_52345597_52371205	1/1	c0001	2559	261	80	52	98	7	22	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	c0002	2559	14	5	2	2	1	4	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	c0003	2559	8	0	0	4	0	4	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	c0004	2559	6	6	0	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	c0005	2559	4	0	2	0	2	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	c0006	2559	3	0	1	2	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	c0007	2559	3	1	2	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	c0008	2556	2	0	0	2	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	c0009	2559	1	0	0	0	0	1	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	c0010	2556	1	0	0	1	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	c0011	2559	1	1	0	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	c0012	2559	1	1	0	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205