JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CC2D1B_chr1_52345597_52371205	0/0	c0013	2559	1	0	0	1	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	c0014	2559	1	0	0	0	0	1	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	c0015	2559	1	0	0	1	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	c0016	2559	1	0	0	1	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	c0017	2559	1	0	1	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	c0018	2559	1	1	0	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	c0019	2559	1	0	0	1	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	c0020	2559	1	0	0	1	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	c0021	2559	1	0	1	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	c0022	2559	1	1	0	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	c0023	2559	1	0	0	1	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	c0024	2559	1	0	1	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	c0025	2559	1	0	1	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	c0026	2559	1	0	0	1	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	c0027	2559	1	0	1	0	0	0	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	c0028	2559	1	0	0	0	0	1	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D1B_chr1_52345597_52371205	0/0	c0029	2559	1	0	0	0	0	1	copy fasta	CC2D1B	chr1	52345597	52371205
CC2D2A_chr4_15464882_15606552	1/1	c0001	4863	177	58	34	44	10	29	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	c0002	4863	43	2	1	40	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	c0003	4863	34	2	8	22	0	2	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	c0004	4863	22	4	6	6	2	4	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	c0005	4863	11	1	1	7	0	2	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	c0006	4863	11	4	1	5	0	1	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	c0007	4860	9	1	4	0	2	2	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	c0008	4863	6	3	0	3	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	c0009	4863	3	0	0	3	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	c0010	4860	2	0	1	0	0	1	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	c0011	4863	2	2	0	0	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	c0012	4863	2	2	0	0	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	c0013	4863	2	1	1	0	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	c0014	4863	1	0	0	1	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	c0015	4863	1	1	0	0	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	c0016	4863	1	1	0	0	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	c0017	4863	1	0	0	0	0	1	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	c0018	4863	1	1	0	0	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	c0019	4863	1	0	0	1	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	c0020	4863	1	0	0	1	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	c0021	4863	1	1	0	0	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	c0022	4863	1	1	0	0	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	c0023	4863	1	1	0	0	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	c0024	4863	1	1	0	0	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	c0025	4863	1	1	0	0	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	c0026	4863	1	0	0	1	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	c0027	4863	1	0	0	1	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	c0028	4863	1	0	0	1	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	c0029	4863	1	0	0	1	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	c0030	4863	1	0	0	1	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	c0031	4863	1	1	0	0	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	c0032	4863	1	1	0	0	0	0	copy fasta	CC2D2A	chr4	15464882	15606552
CC2D2A_chr4_15464882_15606552	0/0	c0033	4863	1	0	1	0	0	0	copy fasta	CC2D2A	chr4	15464882	15606552