JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CC2D2B_chr10_95902975_96038745	0/0	c0001	4314	77	13	8	41	6	9	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0002	4314	50	27	14	8	1	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0003	4314	38	6	6	23	0	3	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0004	4314	24	4	3	16	0	1	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	1/0	c0005	4314	24	0	5	7	2	9	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/1	c0006	4314	23	9	8	1	3	1	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0007	4314	11	0	4	6	1	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0008	4314	11	2	1	2	0	6	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0009	4314	9	1	7	0	1	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0010	4314	4	2	0	0	0	2	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0011	4314	4	3	0	1	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0012	4314	4	4	0	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0013	4314	2	1	1	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0014	4314	2	0	2	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0015	4314	2	2	0	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0016	4314	2	1	1	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0017	4314	2	0	0	2	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0018	4314	1	0	1	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0019	4314	1	0	1	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0020	4314	1	1	0	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0021	4314	1	0	1	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0022	4314	1	0	0	0	0	1	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0023	4314	1	1	0	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0024	4314	1	0	1	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0025	4314	1	1	0	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0026	4314	1	0	0	1	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0027	4314	1	0	1	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0028	4314	1	1	0	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0029	4314	1	1	0	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0030	4314	1	0	0	1	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0031	4314	1	0	0	1	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0032	4314	1	0	1	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0033	4314	1	0	1	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0034	4314	1	0	0	1	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0035	4314	1	0	1	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0036	4314	1	1	0	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0037	4314	1	1	0	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0038	4314	1	1	0	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0039	4314	1	1	0	0	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CC2D2B_chr10_95902975_96038745	0/0	c0040	4314	1	0	0	1	0	0	copy fasta	CC2D2B	chr10	95902975	96038745
CCAR1_chr10_68716239_68797377	0/1	c0001	3453	238	50	49	102	9	27	copy fasta	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	1/0	c0002	3453	70	10	3	48	2	6	copy fasta	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	c0003	3453	37	21	5	10	0	1	copy fasta	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	c0004	3453	8	0	2	0	3	3	copy fasta	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	c0005	3453	2	2	0	0	0	0	copy fasta	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	c0006	3453	1	0	0	0	0	1	copy fasta	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	c0007	3453	1	1	0	0	0	0	copy fasta	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	c0008	3453	1	0	0	1	0	0	copy fasta	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	c0009	3453	1	0	0	1	0	0	copy fasta	CCAR1	chr10	68716239	68797377
CCAR1_chr10_68716239_68797377	0/0	c0010	3453	1	0	1	0	0	0	copy fasta	CCAR1	chr10	68716239	68797377