JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCAR2_chr8_22599757_22625471	1/0	c0001	2772	205	38	54	82	10	20	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/1	c0002	2772	83	4	13	39	7	19	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	c0003	2772	19	14	3	0	1	1	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	c0004	2772	16	13	3	0	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	c0005	2772	13	0	0	13	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	c0006	2772	5	4	0	1	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	c0007	2772	5	0	0	5	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	c0008	2772	5	5	0	0	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	c0009	2772	4	0	0	3	0	1	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	c0010	2772	2	1	1	0	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	c0011	2772	2	0	0	2	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	c0012	2772	1	0	0	1	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	c0013	2772	1	1	0	0	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	c0014	2772	1	0	0	1	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	c0015	2772	1	1	0	0	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	c0016	2772	1	1	0	0	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	c0017	2772	1	0	0	1	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	c0018	2772	1	1	0	0	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	c0019	2772	1	0	0	1	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	c0020	2772	1	0	0	1	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	c0021	2772	1	0	1	0	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	c0022	2772	1	1	0	0	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	c0023	2772	1	1	0	0	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	c0024	2772	1	0	0	1	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	c0025	2772	1	0	1	0	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	c0026	2772	1	0	0	0	0	1	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	c0027	2772	1	0	0	1	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCAR2_chr8_22599757_22625471	0/0	c0028	2772	1	1	0	0	0	0	copy fasta	CCAR2	chr8	22599757	22625471
CCBE1_chr18_59425939_59702423	1/1	c0001	1221	232	82	45	57	12	34	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	c0002	1221	3	3	0	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	c0003	1221	2	0	0	1	0	1	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	c0004	1221	1	0	0	0	0	1	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	c0005	1221	1	0	1	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	c0006	1221	1	0	0	0	0	1	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	c0007	1221	1	0	0	0	0	1	copy fasta	CCBE1	chr18	59425939	59702423
CCBE1_chr18_59425939_59702423	0/0	c0008	1221	1	1	0	0	0	0	copy fasta	CCBE1	chr18	59425939	59702423
CCDC102A_chr16_57507181_57541571	0/1	c0001	1653	318	44	56	168	9	40	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	c0002	1653	64	36	10	7	4	7	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	c0003	1653	6	6	0	0	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	c0004	1653	6	5	1	0	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	c0005	1653	2	2	0	0	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	c0006	1653	2	2	0	0	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	c0007	1653	1	0	0	0	0	1	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	1/0	c0008	1653	1	0	0	0	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	c0009	1653	1	1	0	0	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	c0010	1653	1	0	0	1	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	c0011	1653	1	0	0	0	1	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	c0012	1653	1	0	0	1	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	c0013	1653	1	1	0	0	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	c0014	1653	1	0	1	0	0	0	copy fasta	CCDC102A	chr16	57507181	57541571