JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC102A_chr16_57507181_57541571	0/0	c0015	1653	1	1	0	0	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	c0016	1653	1	0	0	1	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	c0017	1653	1	0	0	1	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	c0018	1653	1	0	0	1	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	c0019	1594	1	0	0	1	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	c0020	1726	1	0	0	1	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	c0021	1653	1	1	0	0	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	c0022	1653	1	0	0	1	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	c0023	1653	1	0	0	1	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102A_chr16_57507181_57541571	0/0	c0024	1653	1	1	0	0	0	0	copy fasta	CCDC102A	chr16	57507181	57541571
CCDC102B_chr18_68793080_69060189	0/0	c0001	1542	49	12	7	21	0	9	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/1	c0002	1542	37	3	10	20	0	3	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0003	1542	22	7	9	0	2	4	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0004	1542	21	3	5	6	2	5	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0005	1542	14	0	1	11	0	2	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	1/0	c0006	1542	7	6	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0007	1542	7	1	0	5	0	1	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0008	1542	6	6	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0009	1542	5	2	2	0	1	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0010	1542	4	3	1	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0011	1542	4	1	1	0	0	2	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0012	1542	4	0	0	4	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0013	1542	3	3	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0014	1542	2	2	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0015	1542	2	2	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0016	1542	2	2	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0017	1542	2	2	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0018	1542	2	2	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0019	1542	2	2	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0020	1542	2	2	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0021	1542	2	2	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0022	1542	1	0	0	1	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0023	1542	1	1	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0024	1542	1	1	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0025	1542	1	1	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0026	1542	1	1	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0027	1542	1	1	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0028	1542	1	1	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0029	1542	1	0	1	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0030	1542	1	1	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0031	1542	1	0	1	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0032	1542	1	1	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0033	1542	1	0	0	0	1	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0034	1542	1	1	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0035	1542	1	1	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0036	1542	1	0	0	1	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0037	1542	1	0	0	1	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC102B_chr18_68793080_69060189	0/0	c0038	1542	1	1	0	0	0	0	copy fasta	CCDC102B	chr18	68793080	69060189
CCDC103_chr17_44894729_44910390	1/1	c0001	729	423	98	75	184	18	46	copy fasta	CCDC103	chr17	44894729	44910390
CCDC103_chr17_44894729_44910390	0/0	c0002	729	1	0	0	1	0	0	copy fasta	CCDC103	chr17	44894729	44910390