Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACOT6_chr14_73607517_73624888	0/0	c0006	1266	4	0	1	1	0	2	copy fasta	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	c0007	1266	3	3	0	0	0	0	copy fasta	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	c0008	1266	3	3	0	0	0	0	copy fasta	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	c0009	1266	1	1	0	0	0	0	copy fasta	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	c0010	1266	1	0	0	1	0	0	copy fasta	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	c0011	1266	1	0	0	0	0	1	copy fasta	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	c0012	1266	1	0	0	1	0	0	copy fasta	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	c0013	1266	1	0	0	1	0	0	copy fasta	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	c0014	1266	1	1	0	0	0	0	copy fasta	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	c0015	1266	1	0	0	1	0	0	copy fasta	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	c0016	1266	1	0	1	0	0	0	copy fasta	ACOT6	chr14	73607517	73624888
ACOT7_chr1_6259272_6398767	1/1	c0001	1113	225	83	40	73	4	23	copy fasta	ACOT7	chr1	6259272	6398767
ACOT7_chr1_6259272_6398767	0/0	c0002	1113	6	6	0	0	0	0	copy fasta	ACOT7	chr1	6259272	6398767
ACOT7_chr1_6259272_6398767	0/0	c0003	1113	2	2	0	0	0	0	copy fasta	ACOT7	chr1	6259272	6398767
ACOT7_chr1_6259272_6398767	0/0	c0004	1113	2	2	0	0	0	0	copy fasta	ACOT7	chr1	6259272	6398767
ACOT7_chr1_6259272_6398767	0/0	c0005	1113	1	0	0	0	0	1	copy fasta	ACOT7	chr1	6259272	6398767
ACOT7_chr1_6259272_6398767	0/0	c0006	1113	1	1	0	0	0	0	copy fasta	ACOT7	chr1	6259272	6398767
ACOT7_chr1_6259272_6398767	0/0	c0007	1113	1	0	0	1	0	0	copy fasta	ACOT7	chr1	6259272	6398767
ACOT7_chr1_6259272_6398767	0/0	c0008	1113	1	1	0	0	0	0	copy fasta	ACOT7	chr1	6259272	6398767
ACOT7_chr1_6259272_6398767	0/0	c0009	1113	1	1	0	0	0	0	copy fasta	ACOT7	chr1	6259272	6398767
ACOT8_chr20_45836721_45862392	1/1	c0001	960	401	90	71	182	16	40	copy fasta	ACOT8	chr20	45836721	45862392
ACOT8_chr20_45836721_45862392	0/0	c0002	964	11	0	0	9	0	2	copy fasta	ACOT8	chr20	45836721	45862392
ACOT8_chr20_45836721_45862392	0/0	c0003	960	3	3	0	0	0	0	copy fasta	ACOT8	chr20	45836721	45862392
ACOT8_chr20_45836721_45862392	0/0	c0004	960	2	1	1	0	0	0	copy fasta	ACOT8	chr20	45836721	45862392
ACOT8_chr20_45836721_45862392	0/0	c0005	960	2	0	0	2	0	0	copy fasta	ACOT8	chr20	45836721	45862392
ACOT8_chr20_45836721_45862392	0/0	c0006	960	1	1	0	0	0	0	copy fasta	ACOT8	chr20	45836721	45862392
ACOT8_chr20_45836721_45862392	0/0	c0007	960	1	0	0	1	0	0	copy fasta	ACOT8	chr20	45836721	45862392
ACOT8_chr20_45836721_45862392	0/0	c0008	960	1	1	0	0	0	0	copy fasta	ACOT8	chr20	45836721	45862392
ACOT9_chrX_23696055_23748276	1/1	c0001	1347	273	67	47	123	8	26	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	c0002	1347	24	8	8	0	5	3	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	c0003	1347	4	2	2	0	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	c0004	1347	2	1	1	0	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	c0005	1358	1	0	0	1	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	c0006	1347	1	0	0	1	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	c0007	1350	1	0	0	1	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	c0008	1345	1	0	0	1	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	c0009	1347	1	0	0	1	0	0	copy fasta	ACOT9	chrX	23696055	23748276
ACOT9_chrX_23696055_23748276	0/0	c0010	1347	1	0	0	0	0	1	copy fasta	ACOT9	chrX	23696055	23748276
ACOX1_chr17_75936507_75984166	1/0	c0001	1983	151	47	23	60	7	13	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/1	c0002	1983	150	14	34	73	9	19	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	c0003	1983	11	10	1	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	c0004	1983	7	6	1	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	c0005	1983	7	6	1	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	c0006	1983	3	3	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	c0007	1983	3	3	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	c0008	1983	2	2	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	c0009	1983	1	0	0	1	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	c0010	1983	1	1	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	c0011	1983	1	0	0	0	0	1	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	c0012	1983	1	1	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166