JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC103_chr17_44894729_44910390	0/0	c0003	729	1	0	1	0	0	0	copy fasta	CCDC103	chr17	44894729	44910390
CCDC103_chr17_44894729_44910390	0/0	c0004	729	1	0	0	1	0	0	copy fasta	CCDC103	chr17	44894729	44910390
CCDC105_chr19_15005726_15028276	0/0	c0001	1500	129	58	29	20	8	14	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/1	c0002	1500	107	2	26	65	1	12	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	1/0	c0003	1500	57	3	9	29	4	11	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	c0004	1500	53	0	7	39	5	2	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	c0005	1500	13	0	0	13	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	c0006	1500	10	10	0	0	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	c0007	1500	8	3	0	3	0	2	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	c0008	1500	7	0	0	7	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	c0009	1500	7	1	1	3	0	2	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	c0010	1500	6	0	4	2	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	c0011	1500	5	0	0	5	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	c0012	1500	5	1	0	3	0	1	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	c0013	1500	4	4	0	0	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	c0014	1500	3	0	0	3	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	c0015	1500	2	0	0	1	0	1	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	c0016	1500	2	1	0	0	0	1	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	c0017	1500	2	1	1	0	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	c0018	1500	2	2	0	0	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	c0019	1500	2	2	0	0	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	c0020	1500	1	0	0	1	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	c0021	1500	1	0	0	1	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	c0022	1500	1	0	1	0	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	c0023	1500	1	0	0	1	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	c0024	1500	1	0	0	1	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	c0025	1500	1	0	1	0	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	c0026	1500	1	0	0	1	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	c0027	1500	1	0	0	1	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	c0028	1500	1	1	0	0	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	c0029	1500	1	1	0	0	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	c0030	1500	1	1	0	0	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	c0031	1500	1	1	0	0	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	c0032	1500	1	0	0	0	0	1	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	c0033	1500	1	0	0	0	0	1	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	c0034	1500	1	0	1	0	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC105_chr19_15005726_15028276	0/0	c0035	1500	1	0	0	1	0	0	copy fasta	CCDC105	chr19	15005726	15028276
CCDC106_chr19_55643212_55658161	0/1	c0001	843	310	60	75	117	13	44	copy fasta	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	1/0	c0002	843	100	40	8	43	2	6	copy fasta	CCDC106	chr19	55643212	55658161
CCDC106_chr19_55643212_55658161	0/0	c0003	843	2	0	1	0	1	0	copy fasta	CCDC106	chr19	55643212	55658161
CCDC107_chr9_35653292_35666511	0/1	c0001	852	309	26	55	178	13	36	copy fasta	CCDC107	chr9	35653292	35666511
CCDC107_chr9_35653292_35666511	1/0	c0002	852	59	36	11	2	2	7	copy fasta	CCDC107	chr9	35653292	35666511
CCDC107_chr9_35653292_35666511	0/0	c0003	852	29	14	5	7	1	2	copy fasta	CCDC107	chr9	35653292	35666511
CCDC107_chr9_35653292_35666511	0/0	c0004	852	21	13	2	4	0	2	copy fasta	CCDC107	chr9	35653292	35666511
CCDC107_chr9_35653292_35666511	0/0	c0005	852	2	2	0	0	0	0	copy fasta	CCDC107	chr9	35653292	35666511
CCDC107_chr9_35653292_35666511	0/0	c0006	852	1	1	0	0	0	0	copy fasta	CCDC107	chr9	35653292	35666511
CCDC107_chr9_35653292_35666511	0/0	c0007	852	1	0	0	1	0	0	copy fasta	CCDC107	chr9	35653292	35666511
CCDC107_chr9_35653292_35666511	0/0	c0008	852	1	0	1	0	0	0	copy fasta	CCDC107	chr9	35653292	35666511
CCDC107_chr9_35653292_35666511	0/0	c0009	852	1	0	0	1	0	0	copy fasta	CCDC107	chr9	35653292	35666511
CCDC107_chr9_35653292_35666511	0/0	c0010	852	1	0	0	1	0	0	copy fasta	CCDC107	chr9	35653292	35666511