JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC107_chr9_35653292_35666511	0/0	c0011	852	1	0	0	0	0	1	copy fasta	CCDC107	chr9	35653292	35666511
CCDC110_chr4_185440182_185476733	0/1	c0001	2502	148	19	34	76	4	14	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	c0002	2502	115	13	25	54	9	14	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	c0003	2502	94	30	15	40	5	4	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	c0004	2502	17	8	3	1	0	5	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	c0005	2502	15	0	0	12	0	3	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	1/0	c0006	2502	6	4	1	0	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	c0007	2502	4	4	0	0	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	c0008	2502	4	4	0	0	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	c0009	2502	3	3	0	0	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	c0010	2502	3	3	0	0	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	c0011	2502	2	2	0	0	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	c0012	2502	2	2	0	0	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	c0013	2502	1	0	0	1	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	c0014	2502	1	1	0	0	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	c0015	2502	1	0	0	0	0	1	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	c0016	2502	1	1	0	0	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	c0017	2502	1	0	0	1	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	c0018	2502	1	1	0	0	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	c0019	2502	1	1	0	0	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	c0020	2502	1	0	1	0	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	c0021	2502	1	1	0	0	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	c0022	2502	1	0	1	0	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	c0023	2502	1	0	0	0	0	1	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	c0024	2502	1	0	0	1	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	c0025	2502	1	1	0	0	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	c0026	2502	1	1	0	0	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC110_chr4_185440182_185476733	0/0	c0027	2502	1	1	0	0	0	0	copy fasta	CCDC110	chr4	185440182	185476733
CCDC112_chr5_115262190_115301654	1/1	c0001	1590	327	78	68	124	15	40	copy fasta	CCDC112	chr5	115262190	115301654
CCDC112_chr5_115262190_115301654	0/0	c0002	1590	26	0	0	26	0	0	copy fasta	CCDC112	chr5	115262190	115301654
CCDC112_chr5_115262190_115301654	0/0	c0003	1590	9	9	0	0	0	0	copy fasta	CCDC112	chr5	115262190	115301654
CCDC112_chr5_115262190_115301654	0/0	c0004	1590	6	0	5	1	0	0	copy fasta	CCDC112	chr5	115262190	115301654
CCDC112_chr5_115262190_115301654	0/0	c0005	1590	5	4	1	0	0	0	copy fasta	CCDC112	chr5	115262190	115301654
CCDC112_chr5_115262190_115301654	0/0	c0006	1590	5	5	0	0	0	0	copy fasta	CCDC112	chr5	115262190	115301654
CCDC112_chr5_115262190_115301654	0/0	c0007	1590	2	0	2	0	0	0	copy fasta	CCDC112	chr5	115262190	115301654
CCDC112_chr5_115262190_115301654	0/0	c0008	1590	1	0	1	0	0	0	copy fasta	CCDC112	chr5	115262190	115301654
CCDC112_chr5_115262190_115301654	0/0	c0009	1590	1	1	0	0	0	0	copy fasta	CCDC112	chr5	115262190	115301654
CCDC112_chr5_115262190_115301654	0/0	c0010	1590	1	0	1	0	0	0	copy fasta	CCDC112	chr5	115262190	115301654
CCDC112_chr5_115262190_115301654	0/0	c0011	1590	1	0	0	1	0	0	copy fasta	CCDC112	chr5	115262190	115301654
CCDC112_chr5_115262190_115301654	0/0	c0012	1590	1	0	0	1	0	0	copy fasta	CCDC112	chr5	115262190	115301654
CCDC112_chr5_115262190_115301654	0/0	c0013	1590	1	0	0	0	1	0	copy fasta	CCDC112	chr5	115262190	115301654
CCDC112_chr5_115262190_115301654	0/0	c0014	1590	1	0	0	1	0	0	copy fasta	CCDC112	chr5	115262190	115301654
CCDC112_chr5_115262190_115301654	0/0	c0015	1590	1	1	0	0	0	0	copy fasta	CCDC112	chr5	115262190	115301654
CCDC113_chr16_58244936_58288836	1/1	c0001	1134	356	70	62	160	18	44	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	c0002	1134	13	0	6	7	0	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	c0003	1134	4	4	0	0	0	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	c0004	1134	2	0	2	0	0	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	c0005	1134	1	0	0	1	0	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	c0006	1134	1	0	0	1	0	0	copy fasta	CCDC113	chr16	58244936	58288836
CCDC113_chr16_58244936_58288836	0/0	c0007	1134	1	0	0	1	0	0	copy fasta	CCDC113	chr16	58244936	58288836