JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC115_chr2_130332933_130347164	1/1	c0001	543	373	81	64	170	14	42	copy fasta	CCDC115	chr2	130332933	130347164
CCDC115_chr2_130332933_130347164	0/0	c0002	543	9	9	0	0	0	0	copy fasta	CCDC115	chr2	130332933	130347164
CCDC115_chr2_130332933_130347164	0/0	c0003	543	1	1	0	0	0	0	copy fasta	CCDC115	chr2	130332933	130347164
CCDC115_chr2_130332933_130347164	0/0	c0004	543	1	1	0	0	0	0	copy fasta	CCDC115	chr2	130332933	130347164
CCDC116_chr22_21627760_21642329	1/0	c0001	1842	217	30	36	119	8	23	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	c0002	1842	51	16	18	5	3	9	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	c0003	1842	24	0	1	16	1	6	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	c0004	1842	20	2	9	1	2	6	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/1	c0005	1842	12	10	0	1	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	c0006	1842	11	0	0	11	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	c0007	1842	10	0	0	7	1	2	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	c0008	1842	9	8	1	0	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	c0009	1842	6	3	3	0	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	c0010	1842	6	6	0	0	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	c0011	1842	5	5	0	0	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	c0012	1842	5	5	0	0	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	c0013	1842	3	3	0	0	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	c0014	1842	2	2	0	0	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	c0015	1842	2	2	0	0	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	c0016	1842	2	2	0	0	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	c0017	1842	1	0	0	1	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	c0018	1842	1	0	1	0	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	c0019	1842	1	0	0	1	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	c0020	1842	1	0	1	0	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	c0021	1842	1	0	0	0	1	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	c0022	1842	1	1	0	0	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	c0023	1842	1	1	0	0	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	c0024	1842	1	1	0	0	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC116_chr22_21627760_21642329	0/0	c0025	1842	1	1	0	0	0	0	copy fasta	CCDC116	chr22	21627760	21642329
CCDC117_chr22_28767695_28794295	1/1	c0001	840	410	82	60	209	11	46	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	c0002	840	2	1	1	0	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	c0003	840	2	1	1	0	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	c0004	840	1	0	0	1	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	c0005	840	1	0	0	0	1	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	c0006	840	1	1	0	0	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC117_chr22_28767695_28794295	0/0	c0007	840	1	1	0	0	0	0	copy fasta	CCDC117	chr22	28767695	28794295
CCDC120_chrX_49053999_49074854	1/1	c0001	2091	268	66	47	107	13	33	copy fasta	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	c0002	2091	11	10	1	0	0	0	copy fasta	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	c0003	2091	2	0	1	0	0	1	copy fasta	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	c0004	2091	1	0	0	1	0	0	copy fasta	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	c0005	2091	1	0	0	1	0	0	copy fasta	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	c0006	2090	1	0	0	1	0	0	copy fasta	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	c0007	2092	1	0	1	0	0	0	copy fasta	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	c0008	2091	1	0	0	1	0	0	copy fasta	CCDC120	chrX	49053999	49074854
CCDC120_chrX_49053999_49074854	0/0	c0009	2092	1	0	1	0	0	0	copy fasta	CCDC120	chrX	49053999	49074854
CCDC121_chr2_27620638_27634012	1/1	c0001	837	370	84	65	165	16	38	copy fasta	CCDC121	chr2	27620638	27634012
CCDC121_chr2_27620638_27634012	0/0	c0002	837	7	0	0	7	0	0	copy fasta	CCDC121	chr2	27620638	27634012
CCDC121_chr2_27620638_27634012	0/0	c0003	837	5	0	0	5	0	0	copy fasta	CCDC121	chr2	27620638	27634012
CCDC121_chr2_27620638_27634012	0/0	c0004	837	1	0	1	0	0	0	copy fasta	CCDC121	chr2	27620638	27634012
CCDC121_chr2_27620638_27634012	0/0	c0005	837	1	0	0	1	0	0	copy fasta	CCDC121	chr2	27620638	27634012