JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC136_chr7_128786968_128827130	0/1	c0002	3465	144	17	32	63	11	20	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	0/0	c0003	3465	19	3	1	15	0	0	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	0/0	c0004	3465	9	8	1	0	0	0	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	0/0	c0005	3465	6	6	0	0	0	0	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	0/0	c0006	3459	4	0	0	4	0	0	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	0/0	c0007	3465	3	3	0	0	0	0	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	1/0	c0008	3465	2	1	0	0	0	0	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	0/0	c0009	3465	2	0	0	0	0	2	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	0/0	c0010	3465	1	0	1	0	0	0	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	0/0	c0011	3465	1	0	0	1	0	0	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	0/0	c0012	3465	1	0	0	1	0	0	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	0/0	c0013	3465	1	0	0	0	1	0	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	0/0	c0014	3465	1	0	0	0	1	0	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	0/0	c0015	3465	1	1	0	0	0	0	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	0/0	c0016	3465	1	0	0	1	0	0	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	0/0	c0017	3465	1	1	0	0	0	0	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	0/0	c0018	3465	1	0	1	0	0	0	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	0/0	c0019	3465	1	0	0	0	0	1	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	0/0	c0020	3465	1	1	0	0	0	0	copy fasta	CCDC136	chr7	128786968	128827130
CCDC136_chr7_128786968_128827130	0/0	c0021	3465	1	1	0	0	0	0	copy fasta	CCDC136	chr7	128786968	128827130
CCDC137_chr17_81661737_81678899	0/0	c0001	870	291	66	59	121	11	34	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	c0002	870	72	11	3	52	2	4	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	c0003	870	15	2	5	0	3	5	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	c0004	867	7	6	1	0	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	c0005	870	4	0	0	4	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	1/0	c0006	870	4	1	2	0	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	c0007	870	3	2	1	0	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	c0008	870	3	3	0	0	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/1	c0009	870	2	0	0	0	1	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	c0010	870	2	0	0	0	1	1	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	c0011	870	2	0	0	2	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	c0012	870	2	1	1	0	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	c0013	870	1	0	1	0	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	c0014	870	1	0	0	1	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	c0015	870	1	1	0	0	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	c0016	870	1	1	0	0	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC137_chr17_81661737_81678899	0/0	c0017	870	1	0	1	0	0	0	copy fasta	CCDC137	chr17	81661737	81678899
CCDC138_chr2_108781771_108881578	0/1	c0001	1998	86	19	17	32	7	10	copy fasta	CCDC138	chr2	108781771	108881578
CCDC138_chr2_108781771_108881578	0/0	c0002	1998	36	20	5	5	1	5	copy fasta	CCDC138	chr2	108781771	108881578
CCDC138_chr2_108781771_108881578	0/0	c0003	1998	35	3	8	17	2	5	copy fasta	CCDC138	chr2	108781771	108881578
CCDC138_chr2_108781771_108881578	1/0	c0004	1998	23	21	1	0	0	0	copy fasta	CCDC138	chr2	108781771	108881578
CCDC138_chr2_108781771_108881578	0/0	c0005	1998	20	18	2	0	0	0	copy fasta	CCDC138	chr2	108781771	108881578
CCDC138_chr2_108781771_108881578	0/0	c0006	1998	7	0	1	6	0	0	copy fasta	CCDC138	chr2	108781771	108881578
CCDC138_chr2_108781771_108881578	0/0	c0007	1998	5	5	0	0	0	0	copy fasta	CCDC138	chr2	108781771	108881578
CCDC138_chr2_108781771_108881578	0/0	c0008	1998	1	1	0	0	0	0	copy fasta	CCDC138	chr2	108781771	108881578
CCDC138_chr2_108781771_108881578	0/0	c0009	1998	1	0	0	1	0	0	copy fasta	CCDC138	chr2	108781771	108881578
CCDC138_chr2_108781771_108881578	0/0	c0010	1998	1	1	0	0	0	0	copy fasta	CCDC138	chr2	108781771	108881578
CCDC138_chr2_108781771_108881578	0/0	c0011	1998	1	0	0	1	0	0	copy fasta	CCDC138	chr2	108781771	108881578
CCDC138_chr2_108781771_108881578	0/0	c0012	1998	1	0	1	0	0	0	copy fasta	CCDC138	chr2	108781771	108881578
CCDC138_chr2_108781771_108881578	0/0	c0013	1998	1	0	1	0	0	0	copy fasta	CCDC138	chr2	108781771	108881578