JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC138_chr2_108781771_108881578	0/0	c0014	1998	1	1	0	0	0	0	copy fasta	CCDC138	chr2	108781771	108881578
CCDC138_chr2_108781771_108881578	0/0	c0015	1998	1	1	0	0	0	0	copy fasta	CCDC138	chr2	108781771	108881578
CCDC13_chr3_42700756_42778253	1/0	c0001	2148	126	24	38	46	4	13	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/1	c0002	2148	53	3	6	24	5	14	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	c0003	2148	52	16	12	16	1	7	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	c0004	2148	27	4	2	21	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	c0005	2148	10	8	0	0	0	2	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	c0006	2148	10	0	1	9	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	c0007	2148	6	0	0	6	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	c0008	2148	4	3	1	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	c0009	2148	4	4	0	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	c0010	2148	4	0	1	2	0	1	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	c0011	2148	3	3	0	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	c0012	2148	3	3	0	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	c0013	2148	3	3	0	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	c0014	2148	3	0	0	3	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	c0015	2148	3	3	0	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	c0016	2148	2	0	2	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	c0017	2148	1	0	0	0	0	1	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	c0018	2148	1	0	0	0	0	1	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	c0019	2148	1	0	0	1	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	c0020	2148	1	1	0	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	c0021	2148	1	1	0	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	c0022	2148	1	0	1	0	0	0	copy fasta	CCDC13	chr3	42700756	42778253
CCDC13_chr3_42700756_42778253	0/0	c0023	2148	1	0	0	0	0	1	copy fasta	CCDC13	chr3	42700756	42778253
CCDC141_chr2_178824757_179055137	0/1	c0001	4593	87	38	16	24	4	4	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0002	4593	47	4	8	30	0	5	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0003	4593	20	9	2	5	0	4	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0004	4593	19	1	7	6	0	5	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0005	4593	12	7	1	1	0	3	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0006	4593	8	0	7	1	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0007	4593	7	0	1	5	0	1	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0008	4593	6	0	0	6	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0009	4593	6	6	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0010	4593	6	0	2	4	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	1/0	c0011	4593	4	3	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0012	4593	3	3	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0013	4593	3	1	0	2	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0014	4593	3	0	1	0	0	2	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0015	4593	3	2	0	0	0	1	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0016	4593	2	0	0	2	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0017	4593	2	0	1	0	0	1	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0018	4593	2	0	0	0	0	2	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0019	4593	2	2	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0020	4593	2	0	0	2	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0021	4593	2	0	0	0	2	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0022	4593	2	0	1	1	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0023	4593	2	1	0	0	0	1	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0024	4593	2	0	1	0	0	1	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0025	4593	2	0	2	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137