JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC141_chr2_178824757_179055137	0/0	c0026	4593	1	1	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0027	4593	1	0	0	0	0	1	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0028	4593	1	0	0	1	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0029	4593	1	1	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0030	4593	1	0	1	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0031	4593	1	0	1	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0032	4593	1	0	0	0	0	1	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0033	4593	1	1	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0034	4593	1	0	1	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0035	4593	1	0	0	1	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0036	4593	1	1	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0037	4593	1	1	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0038	4593	1	1	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0039	4593	1	1	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0040	4593	1	1	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0041	4593	1	0	0	0	0	1	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0042	4593	1	0	0	1	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0043	4593	1	1	0	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0044	4593	1	0	1	0	0	0	copy fasta	CCDC141	chr2	178824757	179055137
CCDC141_chr2_178824757_179055137	0/0	c0045	4593	1	0	0	0	0	1	copy fasta	CCDC141	chr2	178824757	179055137
CCDC142_chr2_74467832_74487998	1/1	c0001	2253	334	78	65	146	14	29	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	c0002	2253	7	6	1	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	c0003	2253	5	5	0	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	c0004	2253	3	2	1	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	c0005	2253	2	0	0	2	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	c0006	2253	2	0	2	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	c0007	2253	2	0	0	2	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	c0008	2253	2	0	0	2	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	c0009	2253	1	1	0	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	c0010	2253	1	0	0	0	0	1	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	c0011	2253	1	0	0	1	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	c0012	2253	1	1	0	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	c0013	2253	1	0	0	1	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	c0014	2253	1	0	1	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	c0015	2253	1	1	0	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	c0016	2253	1	0	1	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	c0017	2253	1	0	1	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	c0018	2253	1	1	0	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	c0019	2253	1	0	0	1	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	c0020	2253	1	1	0	0	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC142_chr2_74467832_74487998	0/0	c0021	2253	1	0	0	1	0	0	copy fasta	CCDC142	chr2	74467832	74487998
CCDC144A_chr17_16685241_16782881	1/0	c0001	4278	136	30	28	54	5	18	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	c0002	4278	110	29	16	48	2	15	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	c0003	4278	37	0	7	27	2	1	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	c0004	4278	8	1	5	0	2	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	c0005	4278	3	3	0	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	c0006	4278	3	3	0	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	c0007	4278	2	2	0	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	c0008	4278	1	0	0	0	0	1	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	c0009	4278	1	0	1	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881