JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC144A_chr17_16685241_16782881	0/0	c0010	4278	1	0	0	1	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	c0011	4278	1	0	0	1	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	c0012	4278	1	1	0	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	c0013	4278	1	1	0	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/1	c0014	4278	1	0	0	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	c0015	4278	1	1	0	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	c0016	4278	1	0	0	1	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	c0017	4278	1	1	0	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	c0018	4278	1	1	0	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	c0019	4278	1	0	0	1	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	c0020	3337	1	0	0	0	1	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	c0021	4278	1	1	0	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	c0022	4278	1	0	0	0	0	1	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	c0023	4278	1	0	0	1	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	c0024	4278	1	1	0	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	c0025	4278	1	0	1	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC144A_chr17_16685241_16782881	0/0	c0026	4278	1	1	0	0	0	0	copy fasta	CCDC144A	chr17	16685241	16782881
CCDC146_chr7_77117615_77300204	0/0	c0001	2868	56	7	18	19	7	5	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	c0002	2868	55	4	9	38	0	4	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	c0003	2868	14	12	2	0	0	0	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	c0004	2868	14	1	3	2	5	3	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/1	c0005	2868	14	0	2	9	0	2	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	c0006	2868	11	1	0	6	3	1	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	1/0	c0007	2868	11	5	1	2	0	2	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	c0008	2868	9	1	3	2	0	3	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	c0009	2868	6	0	0	6	0	0	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	c0010	2868	5	5	0	0	0	0	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	c0011	2868	4	4	0	0	0	0	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	c0012	2868	4	4	0	0	0	0	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	c0013	2868	4	4	0	0	0	0	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	c0014	2868	4	0	0	4	0	0	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	c0015	2868	4	4	0	0	0	0	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	c0016	2868	4	4	0	0	0	0	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	c0017	2868	3	3	0	0	0	0	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	c0018	2868	3	2	0	0	0	1	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	c0019	2868	3	0	2	0	1	0	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	c0020	2868	2	1	1	0	0	0	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	c0021	2868	2	1	0	0	0	1	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	c0022	2868	2	2	0	0	0	0	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	c0023	2868	2	0	2	0	0	0	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	c0024	2868	2	2	0	0	0	0	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	c0025	2868	1	1	0	0	0	0	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	c0026	2868	1	1	0	0	0	0	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	c0027	2868	1	0	0	0	0	1	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	c0028	2868	1	0	1	0	0	0	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	c0029	2868	1	1	0	0	0	0	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	c0030	2868	1	0	0	0	0	1	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	c0031	2868	1	1	0	0	0	0	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	c0032	2868	1	0	0	1	0	0	copy fasta	CCDC146	chr7	77117615	77300204
CCDC146_chr7_77117615_77300204	0/0	c0033	2868	1	0	0	1	0	0	copy fasta	CCDC146	chr7	77117615	77300204