JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC146_chr7_77117615_77300204	0/0	c0034	2868	1	1	0	0	0	0	copy fasta	CCDC146	chr7	77117615	77300204
CCDC148_chr2_158166073_158461753	0/1	c0001	1776	151	32	25	72	7	14	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	0/0	c0002	1776	58	28	2	24	2	2	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	1/0	c0003	1776	13	4	5	1	2	0	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	0/0	c0004	1776	13	0	1	8	2	2	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	0/0	c0005	1776	9	0	0	9	0	0	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	0/0	c0006	1776	4	4	0	0	0	0	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	0/0	c0007	1776	3	3	0	0	0	0	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	0/0	c0008	1776	2	2	0	0	0	0	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	0/0	c0009	1776	2	0	1	0	1	0	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	0/0	c0010	1776	2	0	0	0	1	1	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	0/0	c0011	1776	1	0	0	1	0	0	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	0/0	c0012	1776	1	1	0	0	0	0	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	0/0	c0013	1776	1	1	0	0	0	0	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	0/0	c0014	1776	1	0	0	0	0	1	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	0/0	c0015	1776	1	1	0	0	0	0	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	0/0	c0016	1776	1	0	0	1	0	0	copy fasta	CCDC148	chr2	158166073	158461753
CCDC148_chr2_158166073_158461753	0/0	c0017	1776	1	0	0	0	1	0	copy fasta	CCDC148	chr2	158166073	158461753
CCDC149_chr4_24798514_24918042	1/1	c0001	1608	286	70	55	130	4	25	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	c0002	1608	27	1	1	24	0	1	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	c0003	1608	26	16	4	0	2	4	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	c0004	1608	3	1	2	0	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	c0005	1608	2	1	1	0	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	c0006	1608	1	0	0	1	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	c0007	1608	1	0	0	1	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	c0008	1608	1	1	0	0	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	c0009	1608	1	0	0	1	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	c0010	1608	1	0	0	1	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	c0011	1608	1	0	0	1	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	c0012	1608	1	1	0	0	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	c0013	1608	1	0	0	1	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	c0014	1608	1	1	0	0	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC149_chr4_24798514_24918042	0/0	c0015	1608	1	0	1	0	0	0	copy fasta	CCDC149	chr4	24798514	24918042
CCDC14_chr3_123908422_123966229	0/0	c0001	2718	216	56	23	122	1	14	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/1	c0002	2718	70	10	21	16	5	17	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	1/0	c0003	2718	49	3	8	19	4	14	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	c0004	2718	9	8	1	0	0	0	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	c0005	2718	5	4	1	0	0	0	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	c0006	2718	5	0	0	5	0	0	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	c0007	2718	2	2	0	0	0	0	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	c0008	2718	2	2	0	0	0	0	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	c0009	2718	2	0	0	0	0	2	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	c0010	2718	1	0	1	0	0	0	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	c0011	2718	1	0	0	1	0	0	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	c0012	2718	1	0	0	1	0	0	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	c0013	2718	1	0	1	0	0	0	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	c0014	2718	1	0	0	1	0	0	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	c0015	2718	1	0	0	0	0	1	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	c0016	2718	1	0	0	1	0	0	copy fasta	CCDC14	chr3	123908422	123966229
CCDC14_chr3_123908422_123966229	0/0	c0017	2718	1	1	0	0	0	0	copy fasta	CCDC14	chr3	123908422	123966229