JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC150_chr2_196634715_196737801	1/0	c0001	3306	125	40	30	26	6	22	copy fasta	CCDC150	chr2	196634715	196737801
CCDC150_chr2_196634715_196737801	0/1	c0002	3306	37	14	7	9	0	6	copy fasta	CCDC150	chr2	196634715	196737801
CCDC150_chr2_196634715_196737801	0/0	c0003	3306	18	10	7	1	0	0	copy fasta	CCDC150	chr2	196634715	196737801
CCDC150_chr2_196634715_196737801	0/0	c0004	3306	13	13	0	0	0	0	copy fasta	CCDC150	chr2	196634715	196737801
CCDC150_chr2_196634715_196737801	0/0	c0005	3306	4	0	0	4	0	0	copy fasta	CCDC150	chr2	196634715	196737801
CCDC150_chr2_196634715_196737801	0/0	c0006	3306	3	0	0	3	0	0	copy fasta	CCDC150	chr2	196634715	196737801
CCDC150_chr2_196634715_196737801	0/0	c0007	3306	3	3	0	0	0	0	copy fasta	CCDC150	chr2	196634715	196737801
CCDC150_chr2_196634715_196737801	0/0	c0008	3306	2	2	0	0	0	0	copy fasta	CCDC150	chr2	196634715	196737801
CCDC150_chr2_196634715_196737801	0/0	c0009	3306	1	1	0	0	0	0	copy fasta	CCDC150	chr2	196634715	196737801
CCDC150_chr2_196634715_196737801	0/0	c0010	3306	1	1	0	0	0	0	copy fasta	CCDC150	chr2	196634715	196737801
CCDC150_chr2_196634715_196737801	0/0	c0011	3306	1	0	0	1	0	0	copy fasta	CCDC150	chr2	196634715	196737801
CCDC150_chr2_196634715_196737801	0/0	c0012	3306	1	1	0	0	0	0	copy fasta	CCDC150	chr2	196634715	196737801
CCDC150_chr2_196634715_196737801	0/0	c0013	3306	1	1	0	0	0	0	copy fasta	CCDC150	chr2	196634715	196737801
CCDC150_chr2_196634715_196737801	0/0	c0014	3306	1	0	0	1	0	0	copy fasta	CCDC150	chr2	196634715	196737801
CCDC150_chr2_196634715_196737801	0/0	c0015	3306	1	0	0	1	0	0	copy fasta	CCDC150	chr2	196634715	196737801
CCDC152_chr5_42751818_42807439	1/1	c0001	765	331	75	60	146	11	37	copy fasta	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	c0002	765	8	8	0	0	0	0	copy fasta	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	c0003	765	5	0	3	0	2	0	copy fasta	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	c0004	765	1	0	1	0	0	0	copy fasta	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	c0005	765	1	1	0	0	0	0	copy fasta	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	c0006	765	1	0	0	0	1	0	copy fasta	CCDC152	chr5	42751818	42807439
CCDC152_chr5_42751818_42807439	0/0	c0007	765	1	0	0	0	0	1	copy fasta	CCDC152	chr5	42751818	42807439
CCDC153_chr11_119185254_119200841	1/1	c0001	633	255	52	40	108	12	41	copy fasta	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	c0002	633	110	22	16	62	3	7	copy fasta	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	c0003	633	34	0	18	15	1	0	copy fasta	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	c0004	633	12	12	0	0	0	0	copy fasta	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	c0005	633	8	8	0	0	0	0	copy fasta	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	c0006	633	2	2	0	0	0	0	copy fasta	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	c0007	633	1	1	0	0	0	0	copy fasta	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	c0008	633	1	1	0	0	0	0	copy fasta	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	c0009	633	1	1	0	0	0	0	copy fasta	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	c0010	633	1	0	1	0	0	0	copy fasta	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	c0011	633	1	1	0	0	0	0	copy fasta	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	c0012	633	1	0	1	0	0	0	copy fasta	CCDC153	chr11	119185254	119200841
CCDC153_chr11_119185254_119200841	0/0	c0013	633	1	0	0	1	0	0	copy fasta	CCDC153	chr11	119185254	119200841
CCDC154_chr16_1429383_1449556	0/1	c0001	2004	216	17	39	124	8	27	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0002	2004	43	7	17	8	6	5	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0003	2004	33	17	1	11	0	4	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0004	2004	31	9	6	13	0	3	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0005	2004	28	14	4	5	1	4	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0006	2004	9	6	3	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0007	2004	8	7	1	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0008	2004	6	2	4	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0009	2004	3	3	0	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0010	2004	2	0	1	0	1	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0011	2004	2	0	2	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0012	2004	2	0	1	0	0	1	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0013	2004	2	0	0	2	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0014	2004	2	2	0	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0015	2004	1	0	1	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556