Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACOX1_chr17_75936507_75984166	0/0	c0013	1983	1	0	0	1	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	c0014	1983	1	0	1	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	c0015	1983	1	0	1	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	c0016	1983	1	0	0	1	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	c0017	1983	1	0	0	0	0	1	copy fasta	ACOX1	chr17	75936507	75984166
ACOX1_chr17_75936507_75984166	0/0	c0018	1983	1	1	0	0	0	0	copy fasta	ACOX1	chr17	75936507	75984166
ACOX2_chr3_58500136_58542190	1/1	c0001	2046	238	32	58	100	11	35	copy fasta	ACOX2	chr3	58500136	58542190
ACOX2_chr3_58500136_58542190	0/0	c0002	2046	52	10	3	34	1	4	copy fasta	ACOX2	chr3	58500136	58542190
ACOX2_chr3_58500136_58542190	0/0	c0003	2046	20	14	5	0	1	0	copy fasta	ACOX2	chr3	58500136	58542190
ACOX2_chr3_58500136_58542190	0/0	c0004	2046	17	14	3	0	0	0	copy fasta	ACOX2	chr3	58500136	58542190
ACOX2_chr3_58500136_58542190	0/0	c0005	2046	11	10	1	0	0	0	copy fasta	ACOX2	chr3	58500136	58542190
ACOX2_chr3_58500136_58542190	0/0	c0006	2046	7	4	2	0	0	1	copy fasta	ACOX2	chr3	58500136	58542190
ACOX2_chr3_58500136_58542190	0/0	c0007	2046	3	0	0	3	0	0	copy fasta	ACOX2	chr3	58500136	58542190
ACOX2_chr3_58500136_58542190	0/0	c0008	2046	2	1	1	0	0	0	copy fasta	ACOX2	chr3	58500136	58542190
ACOX2_chr3_58500136_58542190	0/0	c0009	2046	2	2	0	0	0	0	copy fasta	ACOX2	chr3	58500136	58542190
ACOX2_chr3_58500136_58542190	0/0	c0010	2046	2	2	0	0	0	0	copy fasta	ACOX2	chr3	58500136	58542190
ACOX2_chr3_58500136_58542190	0/0	c0011	2046	1	1	0	0	0	0	copy fasta	ACOX2	chr3	58500136	58542190
ACOX2_chr3_58500136_58542190	0/0	c0012	2046	1	0	0	1	0	0	copy fasta	ACOX2	chr3	58500136	58542190
ACOX2_chr3_58500136_58542190	0/0	c0013	2046	1	1	0	0	0	0	copy fasta	ACOX2	chr3	58500136	58542190
ACOX2_chr3_58500136_58542190	0/0	c0014	2046	1	1	0	0	0	0	copy fasta	ACOX2	chr3	58500136	58542190
ACOX2_chr3_58500136_58542190	0/0	c0015	2046	1	1	0	0	0	0	copy fasta	ACOX2	chr3	58500136	58542190
ACOX2_chr3_58500136_58542190	0/0	c0016	2046	1	0	0	0	0	1	copy fasta	ACOX2	chr3	58500136	58542190
ACOX2_chr3_58500136_58542190	0/0	c0017	2046	1	0	0	0	0	1	copy fasta	ACOX2	chr3	58500136	58542190
ACOX2_chr3_58500136_58542190	0/0	c0018	2046	1	0	1	0	0	0	copy fasta	ACOX2	chr3	58500136	58542190
ACOX2_chr3_58500136_58542190	0/0	c0019	2057	1	1	0	0	0	0	copy fasta	ACOX2	chr3	58500136	58542190
ACOX2_chr3_58500136_58542190	0/0	c0020	2046	1	0	0	0	1	0	copy fasta	ACOX2	chr3	58500136	58542190
ACOX3_chr4_8361282_8445723	1/0	c0001	2103	263	36	50	130	11	35	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/1	c0002	2103	53	19	7	19	0	7	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	c0003	2103	31	31	0	0	0	0	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	c0004	2103	6	5	1	0	0	0	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	c0005	2103	5	0	0	5	0	0	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	c0006	2103	3	3	0	0	0	0	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	c0007	2103	2	0	1	0	1	0	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	c0008	2103	2	1	1	0	0	0	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	c0009	2103	1	0	0	1	0	0	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	c0010	2103	1	0	0	1	0	0	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	c0011	2103	1	0	1	0	0	0	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	c0012	2103	1	0	0	1	0	0	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	c0013	2103	1	0	1	0	0	0	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	c0014	2103	1	0	0	0	1	0	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	c0015	2103	1	0	1	0	0	0	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	c0016	2103	1	0	0	0	1	0	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	c0017	2103	1	0	0	1	0	0	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	c0018	2103	1	0	0	1	0	0	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	c0019	2103	1	0	1	0	0	0	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	c0020	2103	1	0	0	0	0	1	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	c0021	2103	1	1	0	0	0	0	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	c0022	2103	1	0	0	1	0	0	copy fasta	ACOX3	chr4	8361282	8445723
ACOX3_chr4_8361282_8445723	0/0	c0023	2103	1	0	0	0	0	1	copy fasta	ACOX3	chr4	8361282	8445723
ACOXL_chr2_110727573_111123548	1/0	c0001	1743	79	40	11	15	5	7	copy fasta	ACOXL	chr2	110727573	111123548