JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC154_chr16_1429383_1449556	0/0	c0016	2004	1	1	0	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0017	2004	1	0	1	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0018	2004	1	1	0	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0019	2004	1	0	0	1	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0020	2004	1	0	0	0	0	1	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0021	2004	1	0	1	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0022	2004	1	0	0	1	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0023	2004	1	0	0	0	0	1	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0024	2004	1	1	0	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0025	2004	1	1	0	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0026	2004	1	0	1	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0027	2004	1	1	0	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0028	2004	1	0	0	0	0	1	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0029	2004	1	0	0	1	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0030	2004	1	0	1	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0031	2004	1	0	0	0	0	1	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0032	2004	1	0	0	1	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	1/0	c0033	2004	1	0	0	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0034	2004	1	0	0	1	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0035	2004	1	1	0	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0036	2004	1	1	0	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0037	2004	1	1	0	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0038	2004	1	1	0	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0039	2004	1	1	0	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0040	2004	1	1	0	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0041	2004	1	0	0	1	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0042	2004	1	0	0	1	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC154_chr16_1429383_1449556	0/0	c0043	2004	1	1	0	0	0	0	copy fasta	CCDC154	chr16	1429383	1449556
CCDC157_chr22_30352007_30383673	0/1	c0001	2259	253	44	40	128	10	30	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	c0002	2259	58	3	13	36	2	4	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	c0003	2259	45	7	10	19	3	6	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	c0004	2259	16	4	3	8	1	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	c0005	2259	15	13	2	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	c0006	2259	8	7	1	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	1/0	c0007	2259	5	0	4	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	c0008	2259	4	3	1	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	c0009	2235	4	2	1	0	0	1	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	c0010	2283	3	3	0	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	c0011	2256	3	3	0	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	c0012	2235	2	0	0	2	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	c0013	2259	2	0	0	2	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	c0014	2259	1	1	0	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	c0015	2259	1	1	0	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	c0016	2259	1	0	0	1	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	c0017	2259	1	0	0	0	0	1	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	c0018	2259	1	0	0	1	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	c0019	2259	1	0	0	0	0	1	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	c0020	2259	1	0	1	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	c0021	2283	1	1	0	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	c0022	2235	1	1	0	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673