JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC157_chr22_30352007_30383673	0/0	c0023	2283	1	0	1	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	c0024	2259	1	1	0	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	c0025	2259	1	0	0	1	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	c0026	2238	1	0	0	1	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	c0027	2259	1	0	0	1	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	c0028	2235	1	0	1	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	c0029	2259	1	0	0	0	0	1	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	c0030	2259	1	0	0	1	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	c0031	2259	1	0	0	0	1	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	c0032	2259	1	1	0	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	c0033	2259	1	1	0	0	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	c0034	2259	1	0	0	1	0	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC157_chr22_30352007_30383673	0/0	c0035	2259	1	0	0	0	1	0	copy fasta	CCDC157	chr22	30352007	30383673
CCDC158_chr4_76308039_76426141	1/0	c0001	3354	243	45	42	122	7	26	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/1	c0002	3354	59	16	12	22	1	7	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	c0003	3354	9	9	0	0	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	c0004	3354	6	0	0	6	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	c0005	3354	4	4	0	0	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	c0006	3354	3	3	0	0	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	c0007	3354	3	0	0	0	0	3	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	c0008	3354	3	2	1	0	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	c0009	3354	2	0	0	2	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	c0010	3354	2	2	0	0	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	c0011	3354	1	0	0	0	0	1	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	c0012	3354	1	0	0	0	1	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	c0013	3354	1	0	0	1	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	c0014	3354	1	1	0	0	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	c0015	3354	1	0	0	1	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	c0016	3354	1	0	0	0	1	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	c0017	3354	1	1	0	0	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	c0018	3354	1	1	0	0	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	c0019	3354	1	0	0	0	0	1	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	c0020	3354	1	0	0	1	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	c0021	3354	1	1	0	0	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	c0022	3354	1	0	0	1	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	c0023	3354	1	0	1	0	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC158_chr4_76308039_76426141	0/0	c0024	3354	1	1	0	0	0	0	copy fasta	CCDC158	chr4	76308039	76426141
CCDC159_chr19_11341519_11359944	1/0	c0001	894	224	37	35	111	10	30	copy fasta	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/1	c0002	894	99	20	27	41	6	4	copy fasta	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	c0003	894	28	24	4	0	0	0	copy fasta	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	c0004	894	2	0	2	0	0	0	copy fasta	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	c0005	894	1	0	0	1	0	0	copy fasta	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	c0006	894	1	1	0	0	0	0	copy fasta	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	c0007	894	1	0	0	1	0	0	copy fasta	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	c0008	904	1	0	0	1	0	0	copy fasta	CCDC159	chr19	11341519	11359944
CCDC159_chr19_11341519_11359944	0/0	c0009	894	1	0	0	1	0	0	copy fasta	CCDC159	chr19	11341519	11359944
CCDC15_chr11_124949202_125046489	1/0	c0001	2856	231	30	59	105	11	25	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/1	c0002	2856	75	28	8	28	2	8	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	c0003	2856	18	10	4	1	1	2	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	c0004	2856	4	0	0	4	0	0	copy fasta	CCDC15	chr11	124949202	125046489