JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC15_chr11_124949202_125046489	0/0	c0005	2856	4	0	0	4	0	0	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	c0006	2856	3	2	1	0	0	0	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	c0007	2856	3	3	0	0	0	0	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	c0008	2856	2	1	1	0	0	0	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	c0009	2856	1	0	0	0	0	1	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	c0010	2856	1	1	0	0	0	0	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	c0011	2856	1	1	0	0	0	0	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	c0012	2856	1	0	1	0	0	0	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	c0013	2856	1	0	0	0	0	1	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	c0014	2856	1	1	0	0	0	0	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	c0015	2856	1	1	0	0	0	0	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	c0016	2856	1	1	0	0	0	0	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	c0017	2856	1	1	0	0	0	0	copy fasta	CCDC15	chr11	124949202	125046489
CCDC15_chr11_124949202_125046489	0/0	c0018	2856	1	0	0	0	0	1	copy fasta	CCDC15	chr11	124949202	125046489
CCDC160_chrX_134232182_134251842	1/1	c0001	978	303	64	57	142	9	29	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	c0002	978	2	0	0	2	0	0	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	c0003	978	1	1	0	0	0	0	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	c0004	978	1	1	0	0	0	0	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	c0005	977	1	0	0	1	0	0	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	c0006	978	1	0	0	1	0	0	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	c0007	978	1	0	0	1	0	0	copy fasta	CCDC160	chrX	134232182	134251842
CCDC160_chrX_134232182_134251842	0/0	c0008	978	1	0	0	1	0	0	copy fasta	CCDC160	chrX	134232182	134251842
CCDC163_chr1_45488866_45505073	1/1	c0001	438	371	67	71	167	18	46	copy fasta	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	c0002	438	18	18	0	0	0	0	copy fasta	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	c0003	373	10	0	0	10	0	0	copy fasta	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	c0004	438	7	7	0	0	0	0	copy fasta	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	c0005	438	1	0	1	0	0	0	copy fasta	CCDC163	chr1	45488866	45505073
CCDC163_chr1_45488866_45505073	0/0	c0006	438	1	0	0	1	0	0	copy fasta	CCDC163	chr1	45488866	45505073
CCDC166_chr8_143701694_143713109	0/0	c0001	1320	382	72	76	182	16	36	copy fasta	CCDC166	chr8	143701694	143713109
CCDC166_chr8_143701694_143713109	0/0	c0002	1320	13	5	2	0	0	6	copy fasta	CCDC166	chr8	143701694	143713109
CCDC166_chr8_143701694_143713109	0/0	c0003	1320	9	8	1	0	0	0	copy fasta	CCDC166	chr8	143701694	143713109
CCDC166_chr8_143701694_143713109	0/0	c0004	1320	6	6	0	0	0	0	copy fasta	CCDC166	chr8	143701694	143713109
CCDC166_chr8_143701694_143713109	0/0	c0005	1320	3	3	0	0	0	0	copy fasta	CCDC166	chr8	143701694	143713109
CCDC166_chr8_143701694_143713109	0/0	c0006	1320	3	0	0	3	0	0	copy fasta	CCDC166	chr8	143701694	143713109
CCDC166_chr8_143701694_143713109	0/0	c0007	1320	2	2	0	0	0	0	copy fasta	CCDC166	chr8	143701694	143713109
CCDC166_chr8_143701694_143713109	0/0	c0008	1320	1	0	0	1	0	0	copy fasta	CCDC166	chr8	143701694	143713109
CCDC166_chr8_143701694_143713109	0/0	c0009	1320	1	1	0	0	0	0	copy fasta	CCDC166	chr8	143701694	143713109
CCDC166_chr8_143701694_143713109	0/0	c0010	1320	1	0	1	0	0	0	copy fasta	CCDC166	chr8	143701694	143713109
CCDC166_chr8_143701694_143713109	0/0	c0011	1320	1	1	0	0	0	0	copy fasta	CCDC166	chr8	143701694	143713109
CCDC166_chr8_143701694_143713109	0/1	c0012	1320	1	0	0	0	0	0	copy fasta	CCDC166	chr8	143701694	143713109
CCDC167_chr6_37477938_37504893	1/1	c0001	294	388	89	55	180	12	50	copy fasta	CCDC167	chr6	37477938	37504893
CCDC167_chr6_37477938_37504893	0/0	c0002	294	9	9	0	0	0	0	copy fasta	CCDC167	chr6	37477938	37504893
CCDC167_chr6_37477938_37504893	0/0	c0003	294	1	0	1	0	0	0	copy fasta	CCDC167	chr6	37477938	37504893
CCDC168_chr13_102724367_102764072	0/0	c0001	21246	78	11	8	52	3	4	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0002	21246	65	3	12	42	2	6	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0003	21246	16	1	0	15	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0004	21246	15	2	5	1	3	4	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/1	c0005	21246	11	0	2	4	0	4	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0006	21246	9	9	0	0	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0007	21246	7	0	0	7	0	0	copy fasta	CCDC168	chr13	102724367	102764072