JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC168_chr13_102724367_102764072	0/0	c0058	21246	1	1	0	0	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0059	21246	1	0	0	0	0	1	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0060	21246	1	0	1	0	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0061	21246	1	0	0	0	0	1	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0062	21246	1	1	0	0	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0063	21246	1	0	0	1	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0064	21246	1	1	0	0	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0065	21246	1	1	0	0	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0066	21246	1	0	0	0	1	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0067	21246	1	1	0	0	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0068	21246	1	0	0	0	0	1	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0069	21246	1	1	0	0	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0070	21246	1	1	0	0	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0071	21246	1	0	1	0	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0072	21246	1	0	0	1	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0073	21246	1	0	0	0	0	1	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0074	21246	1	0	1	0	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0075	21246	1	0	0	0	0	1	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0076	21246	1	0	0	0	0	1	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0077	21246	1	0	0	1	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0078	21246	1	1	0	0	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0079	21246	1	1	0	0	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0080	21246	1	0	1	0	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0081	21246	1	0	0	1	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0082	21246	1	0	0	1	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0083	21246	1	0	0	0	1	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0084	21246	1	0	0	1	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0085	21225	1	0	0	1	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0086	21246	1	0	0	0	0	1	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0087	21246	1	1	0	0	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0088	21246	1	1	0	0	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0089	21246	1	1	0	0	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0090	21246	1	1	0	0	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0091	21246	1	1	0	0	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0092	21246	1	1	0	0	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0093	21246	1	0	0	1	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0094	21246	1	0	0	1	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0095	21246	1	0	0	1	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0096	21246	1	0	0	1	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0097	21246	1	1	0	0	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0098	21246	1	0	0	1	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0099	21246	1	0	1	0	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0100	21246	1	0	0	0	1	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0101	21246	1	0	1	0	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0102	21246	1	0	0	0	0	1	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0103	21246	1	1	0	0	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0104	21246	1	0	1	0	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0105	21246	1	1	0	0	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0106	21246	1	1	0	0	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0107	21246	1	1	0	0	0	0	copy fasta	CCDC168	chr13	102724367	102764072