JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC168_chr13_102724367_102764072	0/0	c0108	21246	1	1	0	0	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0109	21234	1	0	0	1	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0110	21246	1	0	0	1	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0111	21246	1	0	1	0	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0112	21246	1	1	0	0	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0113	21246	1	1	0	0	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC168_chr13_102724367_102764072	0/0	c0114	21246	1	0	0	1	0	0	copy fasta	CCDC168	chr13	102724367	102764072
CCDC169_chr13_36225775_36302814	1/1	c0001	645	208	57	32	89	8	20	copy fasta	CCDC169	chr13	36225775	36302814
CCDC169_chr13_36225775_36302814	0/0	c0002	645	86	8	16	46	4	12	copy fasta	CCDC169	chr13	36225775	36302814
CCDC169_chr13_36225775_36302814	0/0	c0003	645	35	10	10	4	2	9	copy fasta	CCDC169	chr13	36225775	36302814
CCDC169_chr13_36225775_36302814	0/0	c0004	645	23	1	3	18	0	1	copy fasta	CCDC169	chr13	36225775	36302814
CCDC169_chr13_36225775_36302814	0/0	c0005	645	8	7	1	0	0	0	copy fasta	CCDC169	chr13	36225775	36302814
CCDC169_chr13_36225775_36302814	0/0	c0006	645	2	2	0	0	0	0	copy fasta	CCDC169	chr13	36225775	36302814
CCDC169_chr13_36225775_36302814	0/0	c0007	645	1	0	0	1	0	0	copy fasta	CCDC169	chr13	36225775	36302814
CCDC169_chr13_36225775_36302814	0/0	c0008	645	1	1	0	0	0	0	copy fasta	CCDC169	chr13	36225775	36302814
CCDC170_chr6_151489017_151626193	0/1	c0001	2148	85	4	20	51	2	7	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0002	2148	41	7	9	19	0	6	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0003	2148	40	15	4	18	0	3	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0004	2148	25	9	5	8	1	2	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0005	2148	12	3	0	6	0	3	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	1/0	c0006	2148	12	0	6	1	0	4	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0007	2148	12	1	2	9	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0008	2148	11	9	0	1	0	1	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0009	2148	10	0	0	6	0	4	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0010	2148	9	3	3	3	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0011	2148	6	6	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0012	2148	5	3	1	1	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0013	2148	4	0	2	0	2	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0014	2148	4	0	3	0	1	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0015	2148	4	0	0	4	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0016	2148	4	4	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0017	2148	3	3	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0018	2148	2	0	2	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0019	2148	2	2	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0020	2148	2	2	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0021	2148	2	2	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0022	2148	2	2	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0023	2148	2	0	0	2	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0024	2148	2	0	0	2	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0025	2148	1	1	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0026	2148	1	1	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0027	2148	1	1	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0028	2148	1	1	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0029	2148	1	1	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0030	2148	1	1	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0031	2148	1	0	0	0	0	1	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0032	2148	1	1	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0033	2148	1	1	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0034	2148	1	1	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0035	2148	1	0	0	0	1	0	copy fasta	CCDC170	chr6	151489017	151626193