JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC170_chr6_151489017_151626193	0/0	c0036	2148	1	0	0	1	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0037	2148	1	1	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0038	2148	1	0	1	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0039	2148	1	0	0	0	1	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0040	2148	1	0	0	0	0	1	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0041	2148	1	1	0	0	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0042	2148	1	0	0	1	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC170_chr6_151489017_151626193	0/0	c0043	2148	1	0	0	1	0	0	copy fasta	CCDC170	chr6	151489017	151626193
CCDC171_chr9_15548043_15979037	0/1	c0001	3981	97	21	20	39	3	13	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	c0002	3981	62	1	12	37	2	10	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	1/0	c0003	3981	29	17	4	5	1	1	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	c0004	3981	26	0	3	16	0	7	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	c0005	3981	10	4	4	1	0	1	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	c0006	3981	8	8	0	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	c0007	3981	5	5	0	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	c0008	3981	4	0	0	4	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	c0009	3981	2	2	0	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	c0010	3981	2	1	1	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	c0011	3981	2	0	0	1	0	1	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	c0012	3981	2	0	0	2	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	c0013	3981	2	0	2	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	c0014	3981	2	2	0	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	c0015	3981	1	1	0	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	c0016	3981	1	1	0	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	c0017	3981	1	0	0	1	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	c0018	3981	1	0	1	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	c0019	3981	1	0	0	1	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	c0020	3981	1	0	0	1	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	c0021	3981	1	0	1	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	c0022	3981	1	0	0	0	0	1	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	c0023	3981	1	1	0	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	c0024	3981	1	0	0	1	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	c0025	3981	1	1	0	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	c0026	3981	1	1	0	0	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC171_chr9_15548043_15979037	0/0	c0027	3981	1	0	0	1	0	0	copy fasta	CCDC171	chr9	15548043	15979037
CCDC172_chr10_116319448_116385029	1/1	c0001	777	336	82	56	160	12	24	copy fasta	CCDC172	chr10	116319448	116385029
CCDC172_chr10_116319448_116385029	0/0	c0002	777	1	1	0	0	0	0	copy fasta	CCDC172	chr10	116319448	116385029
CCDC172_chr10_116319448_116385029	0/0	c0003	777	1	1	0	0	0	0	copy fasta	CCDC172	chr10	116319448	116385029
CCDC174_chr3_14646762_14677655	1/1	c0001	1404	277	47	43	146	7	32	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	c0002	1404	133	30	33	53	4	13	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	c0003	1404	4	4	0	0	0	0	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	c0004	1404	4	4	0	0	0	0	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	c0005	1404	3	0	1	0	1	1	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	c0006	1404	2	2	0	0	0	0	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	c0007	1404	2	0	2	0	0	0	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	c0008	1404	2	2	0	0	0	0	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	c0009	1404	1	0	0	1	0	0	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	c0010	1404	1	0	0	1	0	0	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	c0011	1404	1	0	1	0	0	0	copy fasta	CCDC174	chr3	14646762	14677655
CCDC174_chr3_14646762_14677655	0/0	c0012	1404	1	1	0	0	0	0	copy fasta	CCDC174	chr3	14646762	14677655