JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC174_chr3_14646762_14677655	0/0	c0013	1404	1	0	0	1	0	0	copy fasta	CCDC174	chr3	14646762	14677655
CCDC175_chr14_59500067_59581812	0/0	c0001	2382	115	13	27	61	2	12	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	c0002	2382	85	13	22	35	3	12	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	c0003	2382	25	16	6	0	2	1	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	c0004	2382	15	11	2	1	1	0	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	1/0	c0005	2382	13	8	1	0	0	3	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	c0006	2382	7	0	3	1	3	0	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	c0007	2382	5	5	0	0	0	0	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	c0008	2382	4	4	0	0	0	0	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	c0009	2382	3	3	0	0	0	0	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	c0010	2382	3	0	3	0	0	0	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	c0011	2382	2	2	0	0	0	0	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	c0012	2382	2	0	0	0	0	2	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	c0013	2382	2	0	2	0	0	0	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	c0014	2382	2	1	1	0	0	0	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/1	c0015	2382	2	0	0	0	1	0	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	c0016	2382	1	1	0	0	0	0	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	c0017	2382	1	1	0	0	0	0	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	c0018	2382	1	0	1	0	0	0	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	c0019	2382	1	1	0	0	0	0	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	c0020	2382	1	1	0	0	0	0	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	c0021	2382	1	1	0	0	0	0	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	c0022	2382	1	1	0	0	0	0	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	c0023	2382	1	1	0	0	0	0	copy fasta	CCDC175	chr14	59500067	59581812
CCDC175_chr14_59500067_59581812	0/0	c0024	2382	1	1	0	0	0	0	copy fasta	CCDC175	chr14	59500067	59581812
CCDC177_chr14_69564799_69579871	0/1	c0001	2118	207	43	30	98	12	23	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	c0002	2118	34	17	6	3	0	8	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	c0003	2121	34	0	3	23	2	6	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	1/0	c0004	2124	23	17	3	2	0	0	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	c0005	2118	18	0	0	16	0	2	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	c0006	2118	4	2	2	0	0	0	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	c0007	2124	3	0	0	3	0	0	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	c0008	2118	2	0	0	2	0	0	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	c0009	2118	1	1	0	0	0	0	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	c0010	2118	1	1	0	0	0	0	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	c0011	2118	1	0	0	1	0	0	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	c0012	2118	1	0	0	1	0	0	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	c0013	2118	1	0	0	0	0	1	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	c0014	2118	1	0	0	0	0	1	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	c0015	2118	1	0	0	1	0	0	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	c0016	2118	1	0	0	0	0	1	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	c0017	2118	1	0	0	0	0	1	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	c0018	2118	1	1	0	0	0	0	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	c0019	2121	1	0	0	0	0	1	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	c0020	2121	1	0	0	0	0	1	copy fasta	CCDC177	chr14	69564799	69579871
CCDC177_chr14_69564799_69579871	0/0	c0021	2118	1	0	0	0	0	1	copy fasta	CCDC177	chr14	69564799	69579871
CCDC178_chr18_32932406_33445721	0/1	c0001	2604	27	17	4	2	0	3	copy fasta	CCDC178	chr18	32932406	33445721
CCDC178_chr18_32932406_33445721	0/0	c0002	2604	12	8	1	3	0	0	copy fasta	CCDC178	chr18	32932406	33445721
CCDC178_chr18_32932406_33445721	0/0	c0003	2604	10	9	0	0	0	1	copy fasta	CCDC178	chr18	32932406	33445721
CCDC178_chr18_32932406_33445721	0/0	c0004	2604	1	1	0	0	0	0	copy fasta	CCDC178	chr18	32932406	33445721