JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC178_chr18_32932406_33445721	0/0	c0005	2604	1	1	0	0	0	0	copy fasta	CCDC178	chr18	32932406	33445721
CCDC178_chr18_32932406_33445721	0/0	c0006	2604	1	1	0	0	0	0	copy fasta	CCDC178	chr18	32932406	33445721
CCDC178_chr18_32932406_33445721	0/0	c0007	2604	1	1	0	0	0	0	copy fasta	CCDC178	chr18	32932406	33445721
CCDC178_chr18_32932406_33445721	0/0	c0008	2604	1	1	0	0	0	0	copy fasta	CCDC178	chr18	32932406	33445721
CCDC178_chr18_32932406_33445721	0/0	c0009	2604	1	1	0	0	0	0	copy fasta	CCDC178	chr18	32932406	33445721
CCDC178_chr18_32932406_33445721	0/0	c0010	2604	1	0	1	0	0	0	copy fasta	CCDC178	chr18	32932406	33445721
CCDC178_chr18_32932406_33445721	0/0	c0011	2604	1	0	0	1	0	0	copy fasta	CCDC178	chr18	32932406	33445721
CCDC178_chr18_32932406_33445721	1/0	c0012	2604	1	0	0	0	0	0	copy fasta	CCDC178	chr18	32932406	33445721
CCDC179_chr11_22841922_22865474	0/0	c0001	207	232	32	33	132	3	32	copy fasta	CCDC179	chr11	22841922	22865474
CCDC179_chr11_22841922_22865474	1/1	c0002	207	214	56	43	84	11	18	copy fasta	CCDC179	chr11	22841922	22865474
CCDC17_chr1_45615044_45629054	0/1	c0001	1869	241	48	40	116	8	28	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	1/0	c0002	1869	133	24	34	57	4	13	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	c0003	1869	19	0	0	18	0	1	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	c0004	1869	12	0	2	10	0	0	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	c0005	1869	6	6	0	0	0	0	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	c0006	1869	3	3	0	0	0	0	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	c0007	1869	3	2	1	0	0	0	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	c0008	1869	2	2	0	0	0	0	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	c0009	1869	2	0	0	2	0	0	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	c0010	1869	2	2	0	0	0	0	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	c0011	1869	1	0	0	0	0	1	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	c0012	1869	1	0	1	0	0	0	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	c0013	1869	1	0	0	1	0	0	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	c0014	1869	1	0	1	0	0	0	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	c0015	1869	1	0	0	1	0	0	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	c0016	1869	1	1	0	0	0	0	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	c0017	1869	1	0	0	1	0	0	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	c0018	1869	1	0	1	0	0	0	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	c0019	1869	1	1	0	0	0	0	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	c0020	1869	1	0	0	0	0	1	copy fasta	CCDC17	chr1	45615044	45629054
CCDC17_chr1_45615044_45629054	0/0	c0021	1869	1	1	0	0	0	0	copy fasta	CCDC17	chr1	45615044	45629054
CCDC180_chr9_97302659_97383751	1/1	c0001	4974	105	16	16	53	6	12	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	c0002	4980	94	8	22	54	1	9	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	c0003	4980	48	18	6	24	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	c0004	4980	32	3	13	7	2	7	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	c0005	4980	24	0	0	24	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	c0006	4980	11	11	0	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	c0007	4980	10	10	0	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	c0008	4980	7	6	1	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	c0009	4980	4	4	0	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	c0010	4980	2	0	0	0	0	2	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	c0011	4980	2	2	0	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	c0012	4974	2	0	2	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	c0013	4980	2	2	0	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	c0014	4980	1	0	1	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	c0015	4980	1	1	0	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	c0016	4980	1	0	0	1	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	c0017	4980	1	0	0	1	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	c0018	4980	1	0	0	1	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	c0019	4980	1	1	0	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751