JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC180_chr9_97302659_97383751	0/0	c0020	4980	1	0	1	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	c0021	4980	1	0	0	1	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	c0022	4980	1	0	0	1	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	c0023	4980	1	1	0	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	c0024	4980	1	1	0	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	c0025	4974	1	0	0	1	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	c0026	4974	1	0	1	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	c0027	4974	1	0	0	1	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	c0028	4974	1	0	0	1	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	c0029	4980	1	0	0	1	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	c0030	4980	1	0	0	1	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	c0031	4980	1	1	0	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	c0032	4980	1	0	1	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	c0033	4974	1	0	0	0	1	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC180_chr9_97302659_97383751	0/0	c0034	4974	1	1	0	0	0	0	copy fasta	CCDC180	chr9	97302659	97383751
CCDC181_chr1_169389870_169432474	0/1	c0001	1530	151	46	30	57	5	12	copy fasta	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	1/0	c0002	1530	93	26	28	15	6	17	copy fasta	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	c0003	1530	91	11	10	60	0	10	copy fasta	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	c0004	1530	26	9	7	0	5	5	copy fasta	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	c0005	1530	3	0	0	3	0	0	copy fasta	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	c0006	1530	1	0	0	1	0	0	copy fasta	CCDC181	chr1	169389870	169432474
CCDC181_chr1_169389870_169432474	0/0	c0007	1530	1	0	1	0	0	0	copy fasta	CCDC181	chr1	169389870	169432474
CCDC182_chr17_57739495_57750299	1/1	c0001	462	255	42	48	127	8	28	copy fasta	CCDC182	chr17	57739495	57750299
CCDC182_chr17_57739495_57750299	0/0	c0002	462	187	43	33	85	6	20	copy fasta	CCDC182	chr17	57739495	57750299
CCDC182_chr17_57739495_57750299	0/0	c0003	462	8	7	1	0	0	0	copy fasta	CCDC182	chr17	57739495	57750299
CCDC182_chr17_57739495_57750299	0/0	c0004	462	4	4	0	0	0	0	copy fasta	CCDC182	chr17	57739495	57750299
CCDC183_chr9_136791338_136812741	0/1	c0001	1605	253	60	55	96	10	31	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0002	1605	43	3	16	14	3	7	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0003	1605	29	2	0	21	2	4	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	1/0	c0004	1605	13	0	3	8	0	1	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0005	1605	9	4	1	4	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0006	1605	7	7	0	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0007	1605	4	0	0	4	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0008	1605	4	4	0	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0009	1605	4	3	1	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0010	1605	2	2	0	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0011	1605	2	1	1	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0012	1605	2	0	2	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0013	1598	1	1	0	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0014	1605	1	1	0	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0015	1605	1	1	0	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0016	3237	1	0	0	1	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0017	3305	1	0	0	1	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0018	1605	1	1	0	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0019	1605	1	1	0	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0020	1605	1	1	0	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0021	1605	1	0	0	0	0	1	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0022	1605	1	0	0	0	1	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0023	1605	1	0	1	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0024	1598	1	1	0	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741