Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACOXL_chr2_110727573_111123548	0/1	c0002	1743	20	6	6	6	0	1	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	c0003	1743	12	0	5	7	0	0	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	c0004	1743	10	0	2	8	0	0	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	c0005	1704	8	7	1	0	0	0	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	c0006	1743	3	3	0	0	0	0	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	c0007	1743	3	1	1	1	0	0	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	c0008	1704	2	2	0	0	0	0	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	c0009	1743	2	0	0	0	1	1	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	c0010	1743	1	1	0	0	0	0	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	c0011	1743	1	0	0	0	0	1	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	c0012	1743	1	0	0	0	0	1	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	c0013	1704	1	1	0	0	0	0	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	c0014	1743	1	1	0	0	0	0	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	c0015	1743	1	0	0	0	1	0	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	c0016	1743	1	0	0	0	0	1	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	c0017	1743	1	0	0	0	1	0	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	c0018	1743	1	1	0	0	0	0	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	c0019	1743	1	0	0	1	0	0	copy fasta	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	c0020	1743	1	1	0	0	0	0	copy fasta	ACOXL	chr2	110727573	111123548
ACP1_chr2_259947_283283	1/1	c0001	477	283	67	54	119	10	31	copy fasta	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	c0002	477	100	22	17	41	7	13	copy fasta	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	c0003	477	2	0	2	0	0	0	copy fasta	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	c0004	477	2	0	1	0	1	0	copy fasta	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	c0005	477	1	1	0	0	0	0	copy fasta	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	c0006	477	1	1	0	0	0	0	copy fasta	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	c0007	477	1	1	0	0	0	0	copy fasta	ACP1	chr2	259947	283283
ACP2_chr11_47234302_47253814	0/1	c0001	1272	177	56	28	71	3	18	copy fasta	ACP2	chr11	47234302	47253814
ACP2_chr11_47234302_47253814	1/0	c0002	1272	158	33	44	49	9	22	copy fasta	ACP2	chr11	47234302	47253814
ACP2_chr11_47234302_47253814	0/0	c0003	1272	17	0	1	12	2	2	copy fasta	ACP2	chr11	47234302	47253814
ACP2_chr11_47234302_47253814	0/0	c0004	1272	1	0	1	0	0	0	copy fasta	ACP2	chr11	47234302	47253814
ACP2_chr11_47234302_47253814	0/0	c0005	1272	1	1	0	0	0	0	copy fasta	ACP2	chr11	47234302	47253814
ACP2_chr11_47234302_47253814	0/0	c0006	1272	1	0	0	1	0	0	copy fasta	ACP2	chr11	47234302	47253814
ACP2_chr11_47234302_47253814	0/0	c0007	1272	1	0	0	1	0	0	copy fasta	ACP2	chr11	47234302	47253814
ACP2_chr11_47234302_47253814	0/0	c0008	1272	1	1	0	0	0	0	copy fasta	ACP2	chr11	47234302	47253814
ACP2_chr11_47234302_47253814	0/0	c0009	1272	1	1	0	0	0	0	copy fasta	ACP2	chr11	47234302	47253814
ACP3_chr3_132312407_132363841	1/0	c0001	1161	241	58	37	116	7	22	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	c0002	1161	87	26	25	19	2	15	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/1	c0003	1161	28	1	9	7	3	7	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	c0004	1161	5	5	0	0	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	c0005	1161	2	0	0	2	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	c0006	1161	2	0	0	2	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	c0007	1161	1	0	1	0	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	c0008	1161	1	0	0	1	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	c0009	1161	1	0	0	1	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP4_chr19_50785415_50800219	1/0	c0001	1281	174	44	55	38	9	27	copy fasta	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/1	c0002	1281	140	14	17	86	5	17	copy fasta	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	c0003	1281	48	16	8	24	0	0	copy fasta	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	c0004	1281	7	6	1	0	0	0	copy fasta	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	c0005	1281	4	4	0	0	0	0	copy fasta	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	c0006	1278	3	3	0	0	0	0	copy fasta	ACP4	chr19	50785415	50800219