JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC183_chr9_136791338_136812741	0/0	c0025	1605	1	0	0	0	0	1	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0026	1605	1	0	1	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0027	1605	1	0	0	1	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0028	1605	1	0	0	1	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0029	1605	1	0	0	1	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0030	1605	1	1	0	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0031	1605	1	0	0	1	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0032	1605	1	0	0	1	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0033	1605	1	0	1	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0034	1673	1	0	0	0	0	1	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0035	1673	1	1	0	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0036	2283	1	1	0	0	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0037	1605	1	0	0	1	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC183_chr9_136791338_136812741	0/0	c0038	1605	1	0	0	1	0	0	copy fasta	CCDC183	chr9	136791338	136812741
CCDC184_chr12_48178644_48190926	1/1	c0001	585	181	32	34	96	3	14	copy fasta	CCDC184	chr12	48178644	48190926
CCDC184_chr12_48178644_48190926	0/0	c0002	585	144	39	30	41	7	27	copy fasta	CCDC184	chr12	48178644	48190926
CCDC184_chr12_48178644_48190926	0/0	c0003	585	84	24	10	41	4	5	copy fasta	CCDC184	chr12	48178644	48190926
CCDC184_chr12_48178644_48190926	0/0	c0004	585	1	1	0	0	0	0	copy fasta	CCDC184	chr12	48178644	48190926
CCDC185_chr1_223388415_223400465	1/0	c0001	1872	255	55	48	116	9	26	copy fasta	CCDC185	chr1	223388415	223400465
CCDC185_chr1_223388415_223400465	0/0	c0002	1872	77	24	16	26	4	7	copy fasta	CCDC185	chr1	223388415	223400465
CCDC185_chr1_223388415_223400465	0/1	c0003	1872	36	3	2	24	0	6	copy fasta	CCDC185	chr1	223388415	223400465
CCDC185_chr1_223388415_223400465	0/0	c0004	1872	5	0	0	5	0	0	copy fasta	CCDC185	chr1	223388415	223400465
CCDC185_chr1_223388415_223400465	0/0	c0005	1872	4	4	0	0	0	0	copy fasta	CCDC185	chr1	223388415	223400465
CCDC185_chr1_223388415_223400465	0/0	c0006	1872	3	0	0	3	0	0	copy fasta	CCDC185	chr1	223388415	223400465
CCDC185_chr1_223388415_223400465	0/0	c0007	1872	2	2	0	0	0	0	copy fasta	CCDC185	chr1	223388415	223400465
CCDC185_chr1_223388415_223400465	0/0	c0008	1872	2	2	0	0	0	0	copy fasta	CCDC185	chr1	223388415	223400465
CCDC185_chr1_223388415_223400465	0/0	c0009	1872	2	0	0	2	0	0	copy fasta	CCDC185	chr1	223388415	223400465
CCDC185_chr1_223388415_223400465	0/0	c0010	1872	2	0	0	2	0	0	copy fasta	CCDC185	chr1	223388415	223400465
CCDC185_chr1_223388415_223400465	0/0	c0011	1872	1	0	0	0	0	1	copy fasta	CCDC185	chr1	223388415	223400465
CCDC185_chr1_223388415_223400465	0/0	c0012	1872	1	1	0	0	0	0	copy fasta	CCDC185	chr1	223388415	223400465
CCDC185_chr1_223388415_223400465	0/0	c0013	1872	1	1	0	0	0	0	copy fasta	CCDC185	chr1	223388415	223400465
CCDC185_chr1_223388415_223400465	0/0	c0014	1872	1	0	0	0	1	0	copy fasta	CCDC185	chr1	223388415	223400465
CCDC185_chr1_223388415_223400465	0/0	c0015	1872	1	0	0	1	0	0	copy fasta	CCDC185	chr1	223388415	223400465
CCDC185_chr1_223388415_223400465	0/0	c0016	1872	1	1	0	0	0	0	copy fasta	CCDC185	chr1	223388415	223400465
CCDC185_chr1_223388415_223400465	0/0	c0017	1872	1	0	0	1	0	0	copy fasta	CCDC185	chr1	223388415	223400465
CCDC185_chr1_223388415_223400465	0/0	c0018	1872	1	1	0	0	0	0	copy fasta	CCDC185	chr1	223388415	223400465
CCDC186_chr10_114115862_114179203	1/1	c0001	2697	200	57	45	68	7	21	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	c0002	2697	59	22	14	13	4	6	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	c0003	2697	5	0	0	5	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	c0004	2697	4	0	2	0	1	1	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	c0005	2697	2	0	0	2	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	c0006	2697	2	2	0	0	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	c0007	2697	1	0	1	0	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	c0008	2697	1	0	1	0	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	c0009	2697	1	1	0	0	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	c0010	2697	1	1	0	0	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	c0011	2697	1	0	1	0	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC186_chr10_114115862_114179203	0/0	c0012	2697	1	1	0	0	0	0	copy fasta	CCDC186	chr10	114115862	114179203
CCDC187_chr9_136244973_136309094	0/0	c0001	6234	17	0	3	12	1	1	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	c0002	6234	16	0	7	8	1	0	copy fasta	CCDC187	chr9	136244973	136309094