JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CCDC187_chr9_136244973_136309094	0/0	c0203	6234	1	0	0	1	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	c0204	6234	1	0	0	1	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	c0205	6234	1	0	0	1	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	c0206	6234	1	0	0	1	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	c0207	6234	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	c0208	6234	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	c0209	6234	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	c0210	6234	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	c0211	6234	1	0	0	0	0	1	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	c0212	6234	1	0	0	1	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	c0213	6234	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	c0214	6234	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	c0215	6234	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	c0216	6234	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	c0217	6234	1	0	0	1	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	c0218	6234	1	0	0	1	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	c0219	6234	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	c0220	6234	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	c0221	6234	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	c0222	6234	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	c0223	6234	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	c0224	6234	1	0	0	1	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	c0225	6234	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	c0226	6234	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	c0227	6234	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	c0228	6235	1	1	0	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC187_chr9_136244973_136309094	0/0	c0229	6234	1	0	1	0	0	0	copy fasta	CCDC187	chr9	136244973	136309094
CCDC188_chr22_20143416_20156055	1/0	c0001	1209	141	43	21	61	9	6	copy fasta	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	c0002	1209	107	0	20	72	3	12	copy fasta	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/1	c0003	1209	83	37	13	20	2	10	copy fasta	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	c0004	1209	67	12	14	29	4	8	copy fasta	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	c0005	1209	2	2	0	0	0	0	copy fasta	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	c0006	1209	2	0	0	2	0	0	copy fasta	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	c0007	1209	2	0	0	0	0	2	copy fasta	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	c0008	1209	1	0	0	0	0	1	copy fasta	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	c0009	1209	1	0	0	1	0	0	copy fasta	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	c0010	1209	1	0	0	0	0	1	copy fasta	CCDC188	chr22	20143416	20156055
CCDC188_chr22_20143416_20156055	0/0	c0011	1209	1	0	0	1	0	0	copy fasta	CCDC188	chr22	20143416	20156055
CCDC18_chr1_93175724_93283730	0/0	c0001	4368	108	16	21	60	2	9	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/0	c0002	4368	106	9	25	56	5	11	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	1/0	c0003	4368	51	31	11	2	3	3	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/0	c0004	4368	22	12	2	8	0	0	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/0	c0005	4368	6	6	0	0	0	0	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/0	c0006	4368	4	0	0	4	0	0	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/0	c0007	4368	3	3	0	0	0	0	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/0	c0008	4368	3	0	3	0	0	0	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/0	c0009	4368	2	0	0	0	2	0	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/0	c0010	4368	2	0	0	0	0	2	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/0	c0011	4368	1	1	0	0	0	0	copy fasta	CCDC18	chr1	93175724	93283730
CCDC18_chr1_93175724_93283730	0/0	c0012	4368	1	1	0	0	0	0	copy fasta	CCDC18	chr1	93175724	93283730